[1] "2025-04-29 17:37:15 MDT" [1] "1301" "130105" "d005" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:37:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "70 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.778" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "71 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:37:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:37:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:37:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:37:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 71 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1365 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:37:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.401 co2off = 379.02 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 105 114 0.07474036 0.08100012 0.07856576 3 -12.33288 203.43934 3 4 115 124 0.08169560 0.08795573 0.08552110 3 66.08855 42.58824 4 3 125 134 0.08865122 0.09491487 0.09387140 3 39.16184 124.97193 6 4 402 411 0.28345584 0.28971496 0.28728076 2 65.94526 44.39440 7 2 412 421 0.29041027 0.29666994 0.29423569 2 -11.26570 204.59810 9 2 696 705 0.49220602 0.49846534 0.49603100 3 -12.01841 204.74661 10 4 706 715 0.49916088 0.50542367 0.50298649 3 66.08373 36.49362 11 5 716 725 0.50611921 0.51237856 0.51133519 NA 31.02259 83.77840 12 3 726 734 0.51377011 0.51933796 0.51863982 3 39.33357 114.28861 14 4 988 997 0.70056658 0.70682639 0.70439214 2 65.89540 46.90279 15 2 998 1007 0.70752170 0.71378924 0.71135038 2 -11.47002 204.62052 17 2 1258 1267 0.90927095 0.91553365 0.91309935 3 -11.22500 202.32364 18 4 1268 1277 0.91622920 0.92248973 0.92005492 3 65.75844 43.79212 19 3 1278 1286 0.92318521 0.92874890 0.92805340 3 39.34967 115.37270 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.299006 1.288925 -0.0102325710 0.20691019 0.026942304 6.8440800 3 1.299093 1.288993 0.0068775551 -0.03649157 0.019049320 3.3073673 4 1.299379 1.289152 0.0081843217 -13.60135249 0.023743701 20.1813766 6 1.304176 1.289173 -0.0097315615 1.37999308 0.023981890 5.4380394 7 1.303960 1.288985 -0.0338562830 -0.19604811 0.083247033 2.5308723 9 1.297696 1.287688 0.0224063254 1.60644214 0.057720511 7.0727603 10 1.297576 1.287559 -0.0024521391 -4.15842223 0.008458324 14.6709817 11 1.297648 1.287569 0.0110436338 2.15926929 0.007822369 8.0747907 12 1.297244 1.287014 0.0029300370 -0.19749796 0.014865781 0.4673307 14 1.294793 1.283991 0.0007660222 1.22461279 0.004564388 5.8838812 15 1.294599 1.283727 -0.0139552991 0.85589036 0.039380455 5.0636155 17 1.294078 1.279317 -0.0054402341 0.94926801 0.020032145 2.5563189 18 1.293842 1.279113 0.0020155202 -0.94998820 0.008044658 2.7844470 19 1.293590 1.278797 0.0083145456 2.85199516 0.024167189 2.8607552 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.011 co2l1 = 0.4 co2l0 = 0.089" [1] "co2l0 = -122.17 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 155 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "99 out of 1185 1-min values rejected as stack air" [1] "99 out of 1185 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"