[1] "2025-04-29 17:36:39 MDT" [1] "1301" "130104" "d004" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:36:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:36:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:36:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:37:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:37:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1404 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:37:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.404 co2off = 373.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 44 53 0.03128932 0.03754841 0.03511413 2 65.60098 44.56274 3 2 54 63 0.03824421 0.04450356 0.04206935 2 -11.45175 200.49657 5 2 336 345 0.23972196 0.24598148 0.24354714 3 -11.56259 200.17947 6 4 346 355 0.24667703 0.25293669 0.25050229 3 65.62818 46.04711 7 5 356 365 0.25363203 0.25989167 0.25884837 NA 32.94550 90.24092 8 3 366 375 0.26058701 0.26687650 0.26581545 3 39.17577 108.51764 10 4 630 639 0.44847792 0.45473701 0.45230278 2 65.64051 46.34013 11 2 640 648 0.45543249 0.46100000 0.45891359 2 -10.50283 202.08791 13 2 917 926 0.65717477 0.66343380 0.66099962 3 -10.99929 201.54034 14 4 927 936 0.66412914 0.67038889 0.66795437 3 65.82755 45.11628 15 3 937 946 0.67108449 0.67734722 0.67630388 3 39.44152 107.31514 17 4 1216 1225 0.86585255 0.87211545 0.86968097 2 65.95368 45.59863 18 2 1226 1235 0.87281082 0.87907052 0.87663616 2 -11.06339 204.93847 19 5 1236 1245 0.87976594 0.88602546 0.88498219 NA 32.55600 102.26911 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.297895 1.285156 -0.003326753 0.4664752 0.010919232 4.406445 3 1.297861 1.285036 0.002466476 1.1877855 0.012551457 5.736605 5 1.296517 1.284420 -0.025453145 1.2530610 0.063900654 3.741866 6 1.296490 1.284425 0.011781386 -0.5494300 0.030819380 3.002621 7 1.296803 1.284761 0.054933622 -0.5675939 0.038890873 1.121368 8 1.296850 1.284831 0.006088605 0.1489417 0.018771087 1.905065 10 1.300627 1.285012 -0.008180362 2.2267360 0.020222546 7.330762 11 1.300496 1.284986 0.002063917 -2.2830548 0.008953054 5.897180 13 1.295844 1.284689 -0.043979764 -1.2966639 0.108550689 7.010004 14 1.296011 1.284883 0.019810504 -1.7026519 0.050985935 9.910955 15 1.296663 1.285567 0.017790160 -6.0001840 0.045450424 9.114634 17 1.302201 1.288057 -0.007834423 0.5140960 0.020006652 1.684392 18 1.302354 1.288242 0.002905665 2.2563762 0.014578365 8.715890 19 1.302097 1.288027 0.038435940 6.0201926 0.027223611 8.269093 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.824 co2l1 = 0.404 co2l0 = 0.085" [1] "co2l0 = -122.57 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "72 out of 1213 1-min values rejected as stack air" [1] "72 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"