[1] "2025-04-29 17:35:47 MDT" [1] "1301" "130103" "d003" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:35:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.776" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.776" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:35:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:35:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:36:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:36:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1431 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:36:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 364.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.79 minutes" [1] "Shortest Cal: 6.04 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 10 0.001704832 0.00796412 0.005529977 1 65.69736 50.79000 4 4 277 286 0.196546296 0.20280611 0.200371709 2 65.66725 49.02772 5 2 287 296 0.203501447 0.20976157 0.207326845 2 -13.20594 203.12842 7 2 577 586 0.405248640 0.41150770 0.409073492 3 -12.60605 208.45892 8 4 587 596 0.412203067 0.41846296 0.416028740 3 65.56988 45.15428 9 3 597 606 0.419158507 0.42541782 0.424374508 3 38.60847 115.93383 11 4 877 886 0.613935185 0.62019416 0.617759946 2 65.70994 45.55469 12 2 887 896 0.620889439 0.62714876 0.624714703 2 -12.64334 203.33057 13 5 897 906 0.627844126 0.63410391 0.633060699 NA 31.56634 94.74547 15 2 1177 1186 0.822613628 0.82887350 0.826438893 3 -12.18627 200.82818 16 4 1187 1196 0.829568866 0.83582778 0.833393822 3 65.45696 42.71660 17 3 1197 1206 0.836523177 0.84278322 0.841740046 3 38.73918 115.55996 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.302679 1.291068 0.0001252367 0.202866082 0.014585063 4.005382 4 1.302671 1.290875 -0.0052870123 0.005838115 0.014480012 5.844056 5 1.302610 1.290784 -0.0281074515 0.855823594 0.070438352 2.976229 7 1.300906 1.289124 0.0019486845 1.538826467 0.006317708 5.514799 8 1.300624 1.288790 0.0062722916 1.248616108 0.017707507 3.642526 9 1.300570 1.288730 -0.0030269995 0.875351614 0.014514194 1.137993 11 1.299498 1.287461 -0.0042020287 0.928206045 0.010617750 4.859643 12 1.299573 1.287529 0.0134665435 -0.059749362 0.036593172 2.874119 13 1.299360 1.287305 0.0517456619 -0.902483246 0.036636970 1.444807 15 1.298563 1.286101 -0.0218180707 -1.002393614 0.054054409 4.098207 16 1.298463 1.285995 0.0067646950 0.232169632 0.018156252 3.391777 17 1.298544 1.286083 0.0032514974 1.514727137 0.008667367 2.225128 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.395 co2l1 = 0.396 co2l0 = 0.111" [1] "co2l0 = -122.95 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "33 out of 1239 1-min values rejected as stack air" [1] "33 out of 1239 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"