[1] "2025-04-29 17:35:15 MDT" [1] "1301" "130102" "d002" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86182 63 [1] 86182 [1] 86182 [1] "testing skipping spike filter" [1] 86182 [1] 86182 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:35:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "47 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:35:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:35:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:35:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:35:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1389 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:35:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.391 co2off = 393.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.68 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 208 217 0.1460779 0.1523372 0.1499031 3 -14.52937 201.05737 3 4 218 227 0.1530328 0.1592924 0.1568582 3 66.19333 41.91021 4 3 228 237 0.1599879 0.1662512 0.1652078 3 38.43443 108.23455 6 4 502 511 0.3547871 0.3610463 0.3586122 2 65.95839 45.14295 7 2 512 521 0.3617419 0.3680013 0.3655674 2 -13.98481 201.83918 9 2 800 809 0.5635208 0.5697801 0.5673457 3 -13.52798 203.60850 10 4 810 819 0.5704753 0.5767350 0.5743005 3 65.85653 45.71075 11 5 820 829 0.5774304 0.5836933 0.5826483 NA 27.49247 94.72162 12 3 830 839 0.5843888 0.5906516 0.5896058 3 38.53855 114.06380 14 4 1096 1105 0.7722170 0.7784764 0.7760421 2 65.65816 39.67776 15 2 1106 1115 0.7791717 0.7854306 0.7829967 2 -13.19971 212.28452 17 2 1385 1389 0.9961408 0.9996181 0.9989227 1 -13.02825 200.21268 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.312990 1.301431 -0.018844707 -0.01238743 0.048027399 4.647189 3 1.312631 1.301078 0.005550834 -1.10907223 0.015062991 3.350133 4 1.312594 1.301063 0.002590696 0.37556612 0.006603016 1.991680 6 1.309779 1.297905 -0.003697245 -0.15927087 0.013016848 3.927587 7 1.309716 1.297824 -0.009195636 0.06240744 0.030279796 3.856231 9 1.306340 1.294284 0.018875164 -0.59072173 0.047001232 3.842599 10 1.306036 1.293999 -0.002663874 0.42688445 0.013139745 7.703847 11 1.305579 1.293551 -0.048111324 0.86193571 0.034073708 3.187289 12 1.305197 1.293016 -0.007981466 -5.84238404 0.019955608 7.667196 14 1.303834 1.291889 -0.001709411 1.20958352 0.005859682 6.084568 15 1.303793 1.291858 -0.012585974 2.70757750 0.035515903 7.954817 17 1.302760 1.291245 -0.002993675 -10.75770406 0.003829395 10.771599 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.664 co2l1 = 0.39 co2l0 = 0.117" [1] "co2l0 = -121.1 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "17 out of 1242 1-min values rejected as stack air" [1] "17 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"