[1] "2025-04-29 17:34:32 MDT" [1] "1301" "130101" "d001" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:34:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.757, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.757, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:34:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:34:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:34:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:34:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1236 row(s) with high PFRIDGE" [1] "TEMP: 188 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:35:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.383 co2off = 374.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 61.82 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 299.55 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 10 0.1026759 0.1089353 0.1065012 2 67.98874 44.20462 2 2 11 30 0.1096308 0.3176515 0.2251590 2 -14.19644 199.49872 3 4 31 40 0.3183469 0.3246098 0.3221750 2 67.35569 48.22725 4 3 41 50 0.3322594 0.3385185 0.3374753 2 39.16812 111.32612 5 4 51 60 0.5200763 0.5263352 0.5239011 2 66.95448 43.90874 6 2 61 78 0.5270312 0.7349155 0.6312340 2 -13.63281 201.59600 7 4 79 88 0.7356111 0.7418738 0.7394384 2 66.54874 45.36557 8 3 89 98 0.7425694 0.7488322 0.7477888 2 38.74123 109.17168 9 4 99 108 0.9373403 0.9435995 0.9411654 2 66.38548 43.74360 10 2 109 118 0.9442952 0.9505544 0.9481204 2 -14.03084 202.58859 11 5 119 128 0.9512500 0.9575094 0.9564660 NA 26.91594 100.13438 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.330738 1.320407 -0.0019831835 -1.36365004 0.010380508 4.148774 2 1.327820 1.317317 0.0018502147 -0.01998936 0.924404542 10.715345 3 1.324937 1.314210 0.0060733512 -1.83372388 0.017476323 6.501560 4 1.324842 1.314140 0.0132167368 -2.63538080 0.032614308 5.769777 5 1.318042 1.306927 -0.0094633893 1.38407977 0.023473169 10.981793 6 1.316847 1.305543 0.0005101986 -0.01163333 0.846752549 6.481457 7 1.316040 1.304699 0.0007381933 -2.04888892 0.015611403 8.165448 8 1.315994 1.304582 -0.0044737741 -4.73922230 0.014583616 9.791936 9 1.316097 1.304708 -0.0012719446 -1.17417117 0.005792713 8.387606 10 1.316102 1.304732 -0.0040338228 -0.25769044 0.012033247 2.656460 11 1.315737 1.304434 -0.0467970050 3.17150395 0.033145630 4.189830 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.014 co2l1 = 0.378 co2l0 = 0" [1] "co2l0 = -123.17 co2l1 = 0.237" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 40 1-min values rejected as stack air" [1] "0 out of 40 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"