[1] "2017-04-05 23:07:01 MDT"
[1] "1301"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1301/130101.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1301/130102.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1301/130103.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1301/130104.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1301/130105.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1301/130106.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1301/130107.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1301/130108.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1301/130109.html"  
[10] "/net/www/docs/homes/stephens/GO2/1301/130110.html"  
[11] "/net/www/docs/homes/stephens/GO2/1301/130111.html"  
[12] "/net/www/docs/homes/stephens/GO2/1301/130112.html"  
[13] "/net/www/docs/homes/stephens/GO2/1301/130113.html"  
[14] "/net/www/docs/homes/stephens/GO2/1301/130114.html"  
[15] "/net/www/docs/homes/stephens/GO2/1301/130115.html"  
[16] "/net/www/docs/homes/stephens/GO2/1301/130116.html"  
[17] "/net/www/docs/homes/stephens/GO2/1301/130117.html"  
[18] "/net/www/docs/homes/stephens/GO2/1301/130118.html"  
[19] "/net/www/docs/homes/stephens/GO2/1301/130119.html"  
[20] "/net/www/docs/homes/stephens/GO2/1301/130120.html"  
[21] "/net/www/docs/homes/stephens/GO2/1301/130121.html"  
[22] "/net/www/docs/homes/stephens/GO2/1301/130122.html"  
[23] "/net/www/docs/homes/stephens/GO2/1301/130123.html"  
[24] "/net/www/docs/homes/stephens/GO2/1301/130124.html"  
[25] "/net/www/docs/homes/stephens/GO2/1301/130125.html"  
[26] "/net/www/docs/homes/stephens/GO2/1301/130126.html"  
[27] "/net/www/docs/homes/stephens/GO2/1301/130127.html"  
[28] "/net/www/docs/homes/stephens/GO2/1301/130128.html"  
[29] "/net/www/docs/homes/stephens/GO2/1301/130129.html"  
[30] "/net/www/docs/homes/stephens/GO2/1301/130130.html"  
[31] "/net/www/docs/homes/stephens/GO2/1301/130131.html"  
[32] "/net/www/docs/homes/stephens/GO2/1301/130201.html"  
[33] "/net/www/docs/homes/stephens/GO2/1301/130202.html"  
[34] "/net/www/docs/homes/stephens/GO2/1301/130203.html"  
[35] "/net/www/docs/homes/stephens/GO2/1301/130204.html"  
[36] "/net/www/docs/homes/stephens/GO2/1301/130205.html"  
[37] "/net/www/docs/homes/stephens/GO2/1301/130206.html"  
[38] "/net/www/docs/homes/stephens/GO2/1301/lmg_1301.html"
 [1] "/net/www/docs/homes/stephens/GO2/1301/130101.html"
 [2] "/net/www/docs/homes/stephens/GO2/1301/130102.html"
 [3] "/net/www/docs/homes/stephens/GO2/1301/130103.html"
 [4] "/net/www/docs/homes/stephens/GO2/1301/130104.html"
 [5] "/net/www/docs/homes/stephens/GO2/1301/130105.html"
 [6] "/net/www/docs/homes/stephens/GO2/1301/130106.html"
 [7] "/net/www/docs/homes/stephens/GO2/1301/130107.html"
 [8] "/net/www/docs/homes/stephens/GO2/1301/130108.html"
 [9] "/net/www/docs/homes/stephens/GO2/1301/130109.html"
[10] "/net/www/docs/homes/stephens/GO2/1301/130110.html"
[11] "/net/www/docs/homes/stephens/GO2/1301/130111.html"
[12] "/net/www/docs/homes/stephens/GO2/1301/130112.html"
[13] "/net/www/docs/homes/stephens/GO2/1301/130113.html"
[14] "/net/www/docs/homes/stephens/GO2/1301/130114.html"
[15] "/net/www/docs/homes/stephens/GO2/1301/130115.html"
[16] "/net/www/docs/homes/stephens/GO2/1301/130116.html"
[17] "/net/www/docs/homes/stephens/GO2/1301/130117.html"
[18] "/net/www/docs/homes/stephens/GO2/1301/130118.html"
[19] "/net/www/docs/homes/stephens/GO2/1301/130119.html"
[20] "/net/www/docs/homes/stephens/GO2/1301/130120.html"
[21] "/net/www/docs/homes/stephens/GO2/1301/130121.html"
[22] "/net/www/docs/homes/stephens/GO2/1301/130122.html"
[23] "/net/www/docs/homes/stephens/GO2/1301/130123.html"
[24] "/net/www/docs/homes/stephens/GO2/1301/130124.html"
[25] "/net/www/docs/homes/stephens/GO2/1301/130125.html"
[26] "/net/www/docs/homes/stephens/GO2/1301/130126.html"
[27] "/net/www/docs/homes/stephens/GO2/1301/130127.html"
[28] "/net/www/docs/homes/stephens/GO2/1301/130128.html"
[29] "/net/www/docs/homes/stephens/GO2/1301/130129.html"
[30] "/net/www/docs/homes/stephens/GO2/1301/130130.html"
[31] "/net/www/docs/homes/stephens/GO2/1301/130131.html"
[32] "/net/www/docs/homes/stephens/GO2/1301/130201.html"
[33] "/net/www/docs/homes/stephens/GO2/1301/130202.html"
[34] "/net/www/docs/homes/stephens/GO2/1301/130203.html"
[35] "/net/www/docs/homes/stephens/GO2/1301/130204.html"
[36] "/net/www/docs/homes/stephens/GO2/1301/130205.html"
[37] "/net/www/docs/homes/stephens/GO2/1301/130206.html"
[1] "130101" "130206"
 [1] "130101" "130102" "130103" "130104" "130105" "130106" "130107" "130108"
 [9] "130109" "130110" "130111" "130112" "130113" "130114" "130115" "130116"
[17] "130117" "130118" "130119" "130120" "130121" "130122" "130123" "130124"
[25] "130125" "130126" "130127" "130128" "130129" "130130" "130131" "130201"
[33] "130202" "130203" "130204" "130205" "130206"
[1] "000000" "999999"
[1] "130101_mr_proc.txt, 130101_cal_periods.txt, 130101_cal_param.txt,188jogs"
[1] "130102_mr_proc.txt, 130102_cal_periods.txt, 130102_cal_param.txt,1389jogs"
[1] "130103_mr_proc.txt, 130103_cal_periods.txt, 130103_cal_param.txt,1431jogs"
[1] "130104_mr_proc.txt, 130104_cal_periods.txt, 130104_cal_param.txt,1404jogs"
[1] "130105_mr_proc.txt, 130105_cal_periods.txt, 130105_cal_param.txt,1365jogs"
[1] "130106_mr_proc.txt, 130106_cal_periods.txt, 130106_cal_param.txt,1148jogs"
[1] "130107_mr_proc.txt, 130107_cal_periods.txt, 130107_cal_param.txt,68jogs"
[1] "130108_mr_proc.txt, 130108_cal_periods.txt, 130108_cal_param.txt,111jogs"
[1] "130109_mr_proc.txt, 130109_cal_periods.txt, 130109_cal_param.txt,130jogs"
[1] "130110_mr_proc.txt, 130110_cal_periods.txt, 130110_cal_param.txt,119jogs"
[1] "130111_mr_proc.txt, 130111_cal_periods.txt, 130111_cal_param.txt,893jogs"
[1] "130112_mr_proc.txt, 130112_cal_periods.txt, 130112_cal_param.txt,1423jogs"
[1] "130113_mr_proc.txt, 130113_cal_periods.txt, 130113_cal_param.txt,1416jogs"
[1] "130114_mr_proc.txt, 130114_cal_periods.txt, 130114_cal_param.txt,1432jogs"
[1] "130115_mr_proc.txt, 130115_cal_periods.txt, 130115_cal_param.txt,1430jogs"
[1] "130116_mr_proc.txt, 130116_cal_periods.txt, 130116_cal_param.txt,1434jogs"
[1] "130117_mr_proc.txt, 130117_cal_periods.txt, 130117_cal_param.txt,1421jogs"
[1] "130118_mr_proc.txt, 130118_cal_periods.txt, 130118_cal_param.txt,1389jogs"
[1] "130119_mr_proc.txt, 130119_cal_periods.txt, 130119_cal_param.txt,1413jogs"
[1] "130120_mr_proc.txt, 130120_cal_periods.txt, 130120_cal_param.txt,1414jogs"
[1] "130121_mr_proc.txt, 130121_cal_periods.txt, 130121_cal_param.txt,1417jogs"
[1] "130122_mr_proc.txt, 130122_cal_periods.txt, 130122_cal_param.txt,1432jogs"
[1] "130123_mr_proc.txt, 130123_cal_periods.txt, 130123_cal_param.txt,1418jogs"
[1] "130124_mr_proc.txt, 130124_cal_periods.txt, 130124_cal_param.txt,1389jogs"
[1] "130125_mr_proc.txt, 130125_cal_periods.txt, 130125_cal_param.txt,1392jogs"
[1] "130126_mr_proc.txt, 130126_cal_periods.txt, 130126_cal_param.txt,1418jogs"
[1] "130127_mr_proc.txt, 130127_cal_periods.txt, 130127_cal_param.txt,1222jogs"
[1] "130128_mr_proc.txt, 130128_cal_periods.txt, 130128_cal_param.txt,1339jogs"
[1] "130129_mr_proc.txt, 130129_cal_periods.txt, 130129_cal_param.txt,1253jogs"
[1] "130130_mr_proc.txt, 130130_cal_periods.txt, 130130_cal_param.txt,1392jogs"
[1] "130131_mr_proc.txt, 130131_cal_periods.txt, 130131_cal_param.txt,1425jogs"
[1] "130201_mr_proc.txt, 130201_cal_periods.txt, 130201_cal_param.txt,1430jogs"
[1] "130202_mr_proc.txt, 130202_cal_periods.txt, 130202_cal_param.txt,1407jogs"
[1] "130203_mr_proc.txt, 130203_cal_periods.txt, 130203_cal_param.txt,1379jogs"
[1] "130204_mr_proc.txt, 130204_cal_periods.txt, 130204_cal_param.txt,1423jogs"
[1] "130205_mr_proc.txt, 130205_cal_periods.txt, 130205_cal_param.txt,1364jogs"
[1] "130206_mr_proc.txt, 130206_cal_periods.txt, 130206_cal_param.txt,784jogs"
[1] "130101" "130206" "d001"   "d037"  
[1] "Calculating derived concentration values"
[1] "2017-04-05 23:09:37 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.785"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-05 23:10:20 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-05 23:11:21 MDT"
[1] "2017-04-05 23:11:34 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -454.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.78 O2 = -549.6"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -633.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.88 O2 = -579"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1301 Valve transient for  Line 1 after Line 2 = 1.18 , 0.6 , -0.92 , -1.14 , -1.17 n = 4"
[1] "1301 Valve transient for  Line 1 after Cal = 0.26 , 0.18 , 0.11 , 0.12 , 0.13 n = 143"
[1] "1301 Valve transient for  Line 2 after Line 1 = 4.95 , -0.68 , -2.11 , -3.1 , -3.12 n = 3"
[1] "1301 Valve transient for  Line 2 after Cal = -1.23 , -0.65 , -0.04 , 0.08 , 0.28 n = 1"
[1] "1301 Valve transient for  Line 1 after HS = -1.17 , -0.6 , -0.03 , -0.02 , -0.01 n = 48"
[1] "1301 Valve transient for  Line 1 after MS = 0.42 , 0.26 , 0.12 , 0.13 , 0.13 n = 68"
[1] "1301 Valve transient for  Line 1 after LS = -10.73 , -10.59 , -10.39 , -10.29 , -10.18 n = 1"
[1] "1301 Valve transient for  Line 1 after LT = 1.37 , 2.17 , 3.39 , 3.39 , 2.67 n = 26"
[1] "1301 Valve transient for  Line 2 after HS = -1.23 , -0.65 , -0.04 , 0.08 , 0.28 n = 1"
[1] "1301 Valve transient for  Line 2 after MS = -2.96 , -3.02 , 0.04 , 5.68 , 12 n = 1"
[1] "1301 Valve transient for  Line 2 after LT = -2.71 , -1.24 , 2.95 , 6.18 , 4.41 n = 1"
[1] "1301 Valve transient for  HS after Line 1 = 1.01 , 0.51 , 0.01 , 0.01 , 0 n = 74"
[1] "1301 Valve transient for  HS after LS = 5.14 , 2.6 , 0.01 , 0 , 0 n = 71"
[1] "1301 Valve transient for  MS after LS = 1.67 , 0.83 , -0.01 , 0 , 0 n = 49"
[1] "1301 Valve transient for  MS after LT = 0.86 , 0.42 , -0.01 , -0.01 , 0 n = 18"
[1] "1301 Valve transient for  LS after Line 1 = -1.81 , -0.9 , 0 , 0 , 0 n = 69"
[1] "1301 Valve transient for  LS after Line 2 = -1.69 , -0.84 , 0 , 0 , 0 n = 2"
[1] "1301 Valve transient for  LS after HS = -4.95 , -2.48 , -0.02 , 0 , 0 n = 78"
[1] "1301 Valve transient for  LT after HS = -1.72 , -1.04 , -0.32 , -0.25 , -0.18 n = 23"
[1] "1301 Valve transient for  LT after LS = 0.69 , 0.18 , -0.31 , -0.24 , -0.18 n = 20"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "798 out of 11504 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "10706 out of 37629 1-min values rejected as stack air"
[1] "10228 out of 37061 Line 1 1-min values rejected as stack air"
[1] "478 out of 568 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1301loxy.d001"
[1] "LMG1301loxy.d002"
[1] "LMG1301loxy.d003"
[1] "LMG1301loxy.d005"
[1] "LMG1301loxy.d006"
[1] "LMG1301loxy.d007"
[1] "LMG1301loxy.d008"
[1] "LMG1301loxy.d009"
[1] "LMG1301loxy.d010"
[1] "LMG1301loxy.d011"
[1] "LMG1301loxy.d012"
[1] "LMG1301loxy.d013"
[1] "LMG1301loxy.d014"
[1] "LMG1301loxy.d015"
[1] "LMG1301loxy.d016"
[1] "LMG1301loxy.d017"
[1] "LMG1301loxy.d018"
[1] "LMG1301loxy.d019"
[1] "LMG1301loxy.d020"
[1] "LMG1301loxy.d021"
[1] "LMG1301loxy.d022"
[1] "LMG1301loxy.d023"
[1] "LMG1301loxy.d024"
[1] "LMG1301loxy.d025"
[1] "LMG1301loxy.d026"
[1] "LMG1301loxy.d027"
[1] "LMG1301loxy.d028"
[1] "LMG1301loxy.d029"
[1] "LMG1301loxy.d030"
[1] "LMG1301loxy.d031"
[1] "LMG1301loxy.d032"
[1] "LMG1301loxy.d033"
[1] "LMG1301loxy.d034"
[1] "LMG1301loxy.d035"
[1] "LMG1301loxy.d036"
[1] "LMG1301loxy.d037"
[1] "LMG1301loxy.d366"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.2832861
 [2,] 102.5 0.2832861
 [3,] 107.5 0.5665722
 [4,] 112.5 0.5665722
 [5,] 117.5 0.2832861
 [6,] 122.5 0.5665722
 [7,] 127.5 0.5665722
 [8,] 132.5 0.8498584
 [9,] 137.5 0.2832861
[10,] 142.5 1.1331445
[11,] 152.5 0.5665722
[12,] 157.5 0.5665722
[13,] 162.5 0.2832861
[14,] 167.5 0.2832861
[15,] 172.5 0.2832861
[16,] 177.5 0.2832861
[17,] 182.5 0.5665722
[18,] 192.5 0.2832861
[19,] 197.5 0.2832861
[20,] 207.5 0.5665722
[21,] 212.5 0.2832861
[22,] 222.5 0.5665722
[23,] 227.5 1.6997167
[24,] 232.5 1.1331445
[25,] 237.5 3.6827195
[26,] 242.5 2.5495751
[27,] 247.5 2.5495751
[28,] 252.5 1.4164306
[29,] 257.5 3.3994334
[30,] 262.5 3.9660057
[31,] 267.5 3.1161473
[32,] 272.5 3.3994334
[33,] 277.5 1.1331445
[34,] 282.5 1.1331445
[35,] 287.5 1.1331445
[36,] 292.5 0.2832861
[37,] 297.5 0.8498584
[38,] 302.5 2.5495751
[39,] 307.5 1.1331445
[40,] 312.5 1.1331445
[41,] 317.5 1.9830028
[42,] 322.5 1.9830028
[43,] 327.5 4.5325779
[44,] 332.5 2.2662890
[45,] 337.5 4.8158640
[46,] 342.5 4.8158640
[47,] 347.5 3.1161473
[48,] 352.5 3.6827195
[49,] 357.5 1.9830028
[50,] 362.5 2.8328612
[51,] 367.5 2.5495751
[52,] 372.5 1.4164306
[53,] 377.5 1.9830028
[54,] 382.5 1.6997167
[55,] 387.5 0.8498584
[56,] 392.5 1.1331445
[57,] 397.5 0.5665722
[58,] 407.5 0.2832861
[59,] 412.5 0.2832861
[60,] 427.5 0.2832861
[61,] 437.5 0.5665722
[62,] 442.5 0.2832861
       [,1]      [,2]
 [1,] 102.5 0.5665722
 [2,] 107.5 0.5665722
 [3,] 112.5 0.2832861
 [4,] 127.5 0.2832861
 [5,] 137.5 0.2832861
 [6,] 222.5 0.2832861
 [7,] 232.5 0.5665722
 [8,] 262.5 0.5665722
 [9,] 272.5 0.2832861
[10,] 297.5 0.2832861
[11,] 302.5 0.5665722
[12,] 307.5 0.8498584
[13,] 312.5 1.1331445
[14,] 317.5 0.2832861
[15,] 322.5 0.5665722
[16,] 327.5 0.2832861
[17,] 332.5 0.8498584
[18,] 337.5 0.5665722
[19,] 432.5 0.2832861
     [,1] [,2]
      [,1]      [,2]
[1,] 447.5 0.2832861
[1] "making cruise html"
[1] "2017-04-05 23:13:02 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"