[1] "2025-04-29 17:33:28 MDT" [1] "1213A" "121223" "d358" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121223a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 77446 63 [1] 77446 [1] 77446 [1] "testing skipping spike filter" [1] 77446 [1] 77446 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:33:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.759, ave o2scale2 = 0.767" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "44 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.759, ave o2scale2 = 0.767" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "44 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:33:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:33:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:33:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:33:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1243 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:33:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.379 co2off = 371.05 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.86 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 6 0.03277587 0.03834323 0.03677765 1 68.14413 31.73772 2 5 7 14 0.04042940 0.04599679 0.04564909 NA 29.15963 101.18879 4 4 271 280 0.22760605 0.23386574 0.23143155 2 68.41901 42.93890 5 2 281 290 0.23456189 0.24082595 0.23838996 2 -13.53732 195.84716 7 2 569 578 0.43638310 0.44264673 0.44020999 3 -13.20495 199.20920 8 4 579 588 0.44334201 0.44960524 0.44716820 3 68.20707 46.13216 9 3 589 598 0.45030067 0.45656366 0.45551782 3 40.09630 113.26176 11 4 864 873 0.64491872 0.65118148 0.64874596 2 68.51650 44.52753 12 2 874 883 0.65187682 0.65813993 0.65570494 2 -13.50455 197.49716 13 5 884 893 0.65883524 0.66509829 0.66405493 NA 32.68922 88.64484 15 2 1163 1172 0.85367862 0.85994161 0.85750668 3 -14.11943 200.77532 16 4 1173 1182 0.86063689 0.86689991 0.86446459 3 68.47791 47.73705 17 3 1183 1192 0.86759534 0.87385810 0.87281505 3 40.12393 120.06424 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.316818 1.303025 0.019545732 -0.82869063 0.052025504 3.34863404 2 1.317719 1.304252 0.258850938 0.13741733 0.183317433 0.09730233 4 1.315570 1.302542 -0.004348852 -1.37370460 0.011872201 6.31818023 5 1.315583 1.302521 0.025417370 1.19097976 0.062862559 3.88451510 7 1.315911 1.302586 -0.012736572 -0.30692655 0.031438587 3.35020048 8 1.315606 1.302321 0.013064558 1.50694746 0.034647579 5.10497085 9 1.315548 1.302307 0.003810567 2.76416794 0.015421476 3.90810796 11 1.318563 1.305238 -0.003304696 0.37139416 0.011989253 1.21004945 12 1.318718 1.305389 0.021559187 -2.68071285 0.054035924 9.04046388 13 1.318504 1.305104 0.053722962 4.03648963 0.038051184 9.78590955 15 1.316835 1.303519 -0.002645791 -0.06116415 0.008472015 4.38372923 16 1.316793 1.303453 0.002274143 0.39624374 0.010254300 2.02262146 17 1.317097 1.303701 0.008280351 0.99539125 0.026911633 2.30811694 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.502 co2l1 = 0.379 co2l0 = 0.115" [1] "co2l0 = -122.98 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "212 out of 239 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "27 out of 1054 1-min values rejected as stack air" [1] "27 out of 1054 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"