[1] "2025-04-29 17:33:15 MDT" [1] "1213A" "121222" "d357" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121222a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 19202 63 [1] 19202 [1] 19202 [1] "testing skipping spike filter" [1] 19202 [1] 19202 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:33:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.758, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.758, ave o2scale2 = 0.766" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:33:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:33:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:33:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:33:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 319 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:33:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.377 co2off = 364.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.02 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 6 0.0008093461 0.004291667 0.003249154 2 68.14786 47.83223 2 3 7 16 0.0049872685 0.011250000 0.010206670 2 40.02511 118.94669 4 4 287 296 0.1998148148 0.206081568 0.203644998 2 68.08473 40.48440 5 2 297 306 0.2067779803 0.213040625 0.210603997 2 -14.27817 202.43106 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.319023 1.305409 0.0010306651 0.6410297 0.001798708 4.955776 2 1.319149 1.305495 0.0069931626 4.1199581 0.019062215 5.444994 4 1.318144 1.304661 0.0047712285 -0.1629023 0.012845360 1.317934 5 1.318332 1.304849 -0.0007444402 1.1177508 0.016685535 4.844071 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.952 co2l1 = 0.372 co2l0 = 0" [1] "co2l0 = -122.21 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 268 1-min values rejected as stack air" [1] "0 out of 268 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"