[1] "2025-04-29 17:32:30 MDT" [1] "1213A" "121221" "d356" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121221a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:32:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.759, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.759, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:32:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:32:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:32:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:32:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1426 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:33:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.381 co2off = 392.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 224 233 0.1560021 0.1622649 0.1598285 3 -14.09207 209.94474 3 4 234 243 0.1629603 0.1692232 0.1667862 3 67.76728 35.61727 4 5 244 253 0.1699185 0.1761815 0.1751354 NA 28.44919 96.80204 5 3 254 263 0.1768768 0.1831356 0.1820926 3 39.63030 119.98440 7 4 521 530 0.3647709 0.3710336 0.3685986 2 67.71629 42.14025 8 2 531 540 0.3717291 0.3779929 0.3755577 2 -13.76491 205.73670 10 2 815 824 0.5735376 0.5798060 0.5773689 3 -12.87426 200.14939 11 4 825 834 0.5805014 0.5867674 0.5843325 3 67.74969 43.18235 12 3 835 844 0.5874630 0.5937339 0.5926910 3 40.05047 113.31377 14 4 1114 1123 0.7823309 0.7885900 0.7861558 2 67.81995 47.65361 15 2 1124 1133 0.7892894 0.7955486 0.7931143 2 -13.70218 204.18609 16 5 1134 1143 0.7962463 0.8025070 0.8014639 NA 28.57994 102.32967 18 2 1414 1423 0.9910729 0.9973322 0.9948979 1 -13.86573 199.56815 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.318297 1.301255 0.003585057 2.82559863 0.011668048 8.419819 3 1.318216 1.301264 0.005638147 1.50832065 0.021527391 5.174652 4 1.318234 1.301355 -0.040332589 0.14635839 0.028726213 4.487337 5 1.318057 1.301130 0.006144668 -3.18780100 0.018473671 8.292086 7 1.317636 1.302092 -0.001224730 -1.50156782 0.011777984 9.547693 8 1.317415 1.301991 -0.029616745 1.43797626 0.073320883 7.763195 10 1.318565 1.304058 0.023704357 -0.51555310 0.058502017 3.824775 11 1.318293 1.303740 -0.001253296 -0.05797682 0.009707324 2.206326 12 1.317967 1.303442 -0.004699890 -2.20803182 0.012511379 3.042191 14 1.317681 1.303618 -0.001533454 3.88019553 0.009998089 11.103633 15 1.317603 1.303621 -0.047898721 -2.49325401 0.118579518 10.819148 16 1.317328 1.303384 -0.035324956 4.32888560 0.025013902 5.930200 18 1.319033 1.305367 0.021673205 -1.79525434 0.053919437 5.584992 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.547 co2l1 = 0.381 co2l0 = 0.104" [1] "co2l0 = -121.96 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "19 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "6 out of 1246 1-min values rejected as stack air" [1] "6 out of 1246 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"