[1] "2025-04-29 17:31:51 MDT" [1] "1213A" "121220" "d355" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121220a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:31:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "57 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:31:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:31:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:32:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:32:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1378 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:32:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.384 co2off = 368.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.56 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 161 170 0.1121817 0.1184444 0.1160081 2 67.33842 38.04659 3 2 171 180 0.1191400 0.1254028 0.1229660 2 -13.90624 180.76688 5 2 452 461 0.3209249 0.3271882 0.3247536 3 -13.47395 204.84981 6 4 462 471 0.3278836 0.3341474 0.3317125 3 67.32978 42.47667 7 3 472 481 0.3348458 0.3411084 0.3400636 3 39.53020 111.24952 9 4 732 741 0.5298044 0.5360672 0.5336317 2 67.48663 45.22895 10 2 742 748 0.5367627 0.5409356 0.5395448 2 -13.24165 203.34319 11 5 749 758 0.5437176 0.5499772 0.5489342 NA 32.52444 93.30952 13 2 1011 1020 0.7385477 0.7448113 0.7423736 3 -12.87695 202.95395 14 4 1021 1030 0.7455069 0.7517697 0.7493331 3 67.47511 43.15240 15 3 1031 1040 0.7524653 0.7587280 0.7576850 3 39.61559 120.78914 17 4 1309 1317 0.9472690 0.9535349 0.9513483 2 67.79515 29.82822 18 2 1318 1324 0.9556216 0.9597948 0.9584038 2 -13.91406 204.37659 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.314936 1.303040 0.0028134876 2.5041134 0.007728639 14.164058 3 1.315227 1.303325 0.0079919438 -4.6795971 0.022261344 23.775903 5 1.313902 1.302463 -0.0003496979 -1.1272183 0.005669541 4.144973 6 1.313706 1.302252 0.0028146240 -0.6998804 0.023961604 2.112928 7 1.313560 1.302143 0.0088407901 -14.0397888 0.024358711 20.365484 9 1.313117 1.301646 -0.0019491014 -0.1171757 0.010527305 3.261368 10 1.313257 1.301826 0.0137804345 1.1654934 0.024303846 3.521138 11 1.313536 1.302013 0.0548064919 0.3773241 0.038802485 1.411143 13 1.312001 1.300154 -0.0423310807 -0.1929691 0.105659760 3.009163 14 1.311433 1.299580 0.0219132572 -1.9123702 0.054630698 8.015064 15 1.311397 1.299593 0.0036257200 2.6747363 0.009766241 3.941768 17 1.313006 1.300378 -0.0005276361 4.1146505 0.002499454 26.798839 18 1.313331 1.300586 0.0132671778 5.6021949 0.021050766 9.625613 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.512 co2l1 = 0.383 co2l0 = 0.121" [1] "co2l0 = -121.45 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "157 out of 300 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "143 out of 1203 1-min values rejected as stack air" [1] "143 out of 1203 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"