[1] "2025-04-29 17:31:04 MDT" [1] "1213A" "121219" "d354" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:31:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "23 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "25 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:31:09 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:31:09 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:31:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:31:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 25 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1411 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:31:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.383 co2off = 374.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.68 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 97 106 0.06871762 0.07497781 0.07254324 3 -14.21978 198.10671 3 4 107 116 0.07567303 0.08193194 0.07949801 3 66.88995 41.37667 4 3 117 126 0.08262740 0.08888698 0.08784400 3 39.00095 110.85387 6 4 391 400 0.27747228 0.28373869 0.28130152 2 66.94441 44.88806 7 2 401 410 0.28443406 0.29069332 0.28825920 2 -14.33914 206.51709 8 5 411 420 0.29138909 0.29764818 0.29660499 NA 28.49356 86.28649 10 2 690 699 0.48595098 0.49221406 0.48977953 3 -13.86081 200.71707 11 4 700 709 0.49290946 0.49917245 0.49673625 3 66.97768 40.99054 12 3 710 719 0.49986806 0.50613079 0.50508684 3 39.21012 111.30472 14 4 990 999 0.69471267 0.70097405 0.69853789 2 67.15736 43.90579 15 2 1000 1009 0.70167112 0.70793018 0.70549603 2 -14.04858 201.80461 17 2 1286 1292 0.90414005 0.90831256 0.90692177 2 -13.53005 185.06434 18 4 1293 1302 0.91040278 0.91666574 0.91422921 2 67.17665 40.90812 19 5 1303 1312 0.91736114 0.92362040 0.92257723 NA 28.90159 100.95274 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.311404 1.299716 -0.0024006674 -0.97112296 0.008778716 2.842824 3 1.311250 1.299560 0.0009029390 -0.07222306 0.011494391 4.253580 4 1.311220 1.299561 0.0033101446 -1.07389925 0.015844545 1.711259 6 1.312549 1.300695 0.0064031426 -0.12419949 0.018143923 2.212869 7 1.312725 1.300928 0.0017194643 1.59609460 0.024630342 5.839415 8 1.312858 1.301112 -0.0195931611 1.11368980 0.013876971 2.229827 10 1.313699 1.302040 0.0124688467 1.22851206 0.031355643 3.319478 11 1.313536 1.301858 0.0005990019 0.46705022 0.009455750 2.545876 12 1.313723 1.301965 0.0051882496 2.20267832 0.016410894 3.203856 14 1.314691 1.303183 0.0022759136 -0.46431607 0.011467868 2.690182 15 1.314775 1.303283 0.0010047241 -0.30983310 0.011797811 1.276114 17 1.314841 1.302868 -0.0111599084 12.04846077 0.018665769 24.259893 18 1.314578 1.302768 0.0013753727 0.92079034 0.013260817 3.362689 19 1.314609 1.302812 -0.0363829256 3.31227883 0.025765203 5.221020 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.701 co2l1 = 0.383 co2l0 = 0.111" [1] "co2l0 = -122.13 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "51 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "29 out of 1210 1-min values rejected as stack air" [1] "29 out of 1210 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"