[1] "2025-04-29 17:30:08 MDT" [1] "1213A" "121218" "d353" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:30:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.762, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.762, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "6 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:30:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:30:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:30:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:30:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 6 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:31:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.378 co2off = 380.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 36 45 0.02490272 0.03116562 0.02873148 2 66.78020 40.65461 3 2 46 55 0.03186337 0.03812812 0.03569068 2 -15.30487 201.16168 4 5 56 63 0.03882364 0.04508611 0.04473860 NA 27.43656 106.48299 6 2 334 343 0.23364737 0.23991045 0.23747585 3 -15.35936 199.93741 7 4 344 353 0.24060590 0.24687115 0.24443508 3 66.87984 41.22837 8 3 354 363 0.24756829 0.25383235 0.25278937 3 38.57625 112.23217 10 4 634 643 0.44247106 0.44873391 0.44629894 2 66.80459 47.86769 11 2 644 653 0.44942940 0.45568872 0.45325445 2 -15.54773 208.51371 13 2 932 941 0.65120486 0.65746759 0.65503360 3 -15.50634 199.82791 14 4 942 951 0.65816319 0.66442598 0.66199173 3 66.81535 42.98050 15 5 952 961 0.66512153 0.67138426 0.67034109 NA 26.65212 97.18122 16 3 962 971 0.67207986 0.67834259 0.67729950 3 38.55765 110.29395 18 4 1230 1239 0.85995700 0.86621988 0.86378562 2 66.77570 39.76495 19 2 1240 1249 0.86691534 0.87317824 0.87074304 2 -14.23449 201.60783 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.313472 1.299497 -6.107064e-03 -5.372631e-01 0.015554403 4.106427 3 1.313419 1.299449 -1.955865e-02 8.494717e-01 0.052492368 5.002482 4 1.313487 1.299576 5.925849e-01 2.523613e-14 0.419579486 0.000000 6 1.312731 1.299113 -6.012713e-04 9.976267e-01 0.014468707 2.853084 7 1.312555 1.298929 6.918033e-04 2.861679e-01 0.017919089 2.420562 8 1.312504 1.298860 8.034558e-03 1.386950e+00 0.023060576 2.008938 10 1.311549 1.298436 -1.906657e-05 -1.778417e+00 0.002479815 7.513798 11 1.311757 1.298639 1.019021e-03 2.460563e+00 0.022191484 8.473385 13 1.311799 1.299499 -7.449355e-03 -8.470490e-01 0.021852310 5.825844 14 1.311580 1.299427 -4.813601e-04 7.144994e-01 0.012992397 11.704870 15 1.311707 1.299683 -2.820651e-02 2.956012e+00 0.019975767 3.830967 16 1.311681 1.299672 1.638479e-02 -2.024358e+00 0.041316909 2.719791 18 1.311650 1.299629 -6.932382e-03 7.883934e-01 0.020079931 3.536027 19 1.311738 1.299642 -1.159763e-03 4.740233e-01 0.010757132 2.851120 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.085 co2l1 = 0.379 co2l0 = 0.125" [1] "co2l0 = -121.9 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "57 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "58 out of 1240 1-min values rejected as stack air" [1] "58 out of 1240 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"