[1] "2017-04-05 22:29:55 MDT" [1] "1213A" "121217" "d352" [1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/121217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2017-04-05 22:30:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.769" [1] "52 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.769" [1] "52 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2017-04-05 22:30:03 MDT" [1] "Plotting 1-second data" [1] "2017-04-05 22:30:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2017-04-05 22:30:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2017-04-05 22:30:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 812 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2017-04-05 22:30:14 MDT" [1] "Reading in cylinder log" Read 68 records [1] "Finding cylinder IDs" Read 420 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -454.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -549.6" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -633.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 393.88 O2 = -579" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.38 co2off = 370.29 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.16 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods$grp" [1] 2 2 3 3 3 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.838 co2l1 = 0.379 co2l0 = 0.126" [1] "co2l0 = -122.54 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "13 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 723 1-min values rejected as stack air" [1] "2 out of 723 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"