[1] "2025-04-29 17:29:52 MDT" [1] "1213A" "121217" "d352" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 52320 63 [1] 52320 [1] 52320 [1] "testing skipping spike filter" [1] 52320 [1] 52320 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:29:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.769" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "52 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.769" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "52 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:29:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:29:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:30:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:30:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 812 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:30:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.38 co2off = 370.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.16 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 4 4 263 272 0.6081673 0.6144268 0.6119926 2 66.82484 34.37685 1.314801 5 2 273 282 0.6151221 0.6213854 0.6189505 2 -14.72234 194.48278 1.314852 7 2 549 557 0.8161653 0.8217294 0.8196427 3 -15.07396 199.15922 1.314548 8 4 558 566 0.8224248 0.8279929 0.8259045 3 66.82659 45.36161 1.314565 9 3 567 575 0.8286884 0.8342557 0.8335602 3 38.62635 108.11845 1.314645 jfcv2 co2slp o2slp co2sd o2sd 4 1.300529 -0.002972513 -2.124411 0.010130727 10.302573 5 1.300601 0.004370867 4.673403 0.010991728 12.484769 7 1.300473 0.002672099 2.664925 0.007365435 6.438500 8 1.300478 0.003282160 -1.239802 0.018491160 5.022345 9 1.300599 0.038111331 7.341935 0.084265414 7.425353 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.007 co2l1 = 0.38 co2l0 = 0.128" [1] "co2l0 = -121.29 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "13 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 723 1-min values rejected as stack air" [1] "2 out of 723 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"