[1] "2025-04-29 17:29:15 MDT" [1] "1213A" "121214" "d349" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 59042 63 [1] 59042 [1] 59042 [1] "testing skipping spike filter" [1] 59042 [1] 59042 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:29:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:29:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:29:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:29:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:29:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 970 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:29:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.375 co2off = 380.62 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.12 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 125 134 0.08716163 0.09342465 0.09098778 2 66.31827 40.20309 3 2 135 144 0.09411994 0.10038252 0.09794666 2 -16.44095 199.50939 5 2 416 425 0.29591698 0.30217980 0.29974537 3 -16.50741 205.50643 6 4 426 435 0.30287517 0.30913950 0.30670440 3 66.25816 43.88780 7 3 436 445 0.30983791 0.31610069 0.31505556 3 37.79762 110.27897 9 4 716 725 0.50474080 0.51100087 0.50856665 2 66.17250 41.39641 10 2 726 735 0.51169630 0.51795914 0.51552350 2 -16.28807 200.22994 11 5 736 745 0.51866209 0.52499769 0.52394275 NA 26.20353 94.90035 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.301947 1.286737 0.0039608118 0.3104733 0.010639220 2.424785 3 1.302263 1.287044 -0.0012871823 -0.5395549 0.016411041 3.483943 5 1.302003 1.286943 -0.0022367235 -0.3811998 0.005941399 10.618517 6 1.301931 1.286843 0.0031537273 2.3007207 0.013094522 9.923688 7 1.302021 1.287009 0.0048392843 2.0929781 0.013616332 3.506260 9 1.303274 1.288759 -0.0006061162 -0.9928638 0.006780026 7.955421 10 1.303452 1.288925 -0.0075468220 0.1613948 0.023363381 3.438909 11 1.303402 1.288814 -0.0250218395 0.0170094 0.017721864 3.822511 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.496 co2l1 = 0.375 co2l0 = 0.135" [1] "co2l0 = -121.62 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "26 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "29 out of 853 1-min values rejected as stack air" [1] "29 out of 853 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"