[1] "2025-04-29 17:28:27 MDT" [1] "1213A" "121213" "d348" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:28:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "12 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:28:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:28:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:28:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:28:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 12 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1424 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:29:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.373 co2off = 380.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.75 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 59 68 0.04340929 0.04967216 0.04723537 3 -16.02534 205.83829 3 4 69 78 0.05036751 0.05663050 0.05419451 3 67.46984 41.26429 4 3 79 88 0.05732587 0.06358533 0.06254196 3 38.71295 107.98424 6 4 359 368 0.25215446 0.25841667 0.25598270 2 67.09806 45.22556 7 2 369 378 0.25911589 0.26538122 0.26294229 2 -16.28308 203.25985 8 5 379 388 0.26607645 0.27233805 0.27129490 NA 30.73778 92.79304 10 2 656 665 0.46092462 0.46718704 0.46474991 3 -16.68167 201.24792 11 4 666 675 0.46788310 0.47414236 0.47170818 3 66.82606 49.11938 12 3 676 683 0.47484164 0.47970990 0.47936221 3 38.14508 126.36060 14 4 953 962 0.66967425 0.67593348 0.67349929 2 66.61080 50.14158 15 2 963 972 0.67662951 0.68289198 0.68045474 2 -16.72324 198.70921 19 2 1253 1262 0.87840052 0.88466345 0.88222898 3 -16.37683 202.76859 20 4 1263 1272 0.88535885 0.89162156 0.88918675 3 66.36088 42.94282 22 3 1281 1290 0.89927595 0.90553895 0.90449541 3 37.87298 113.67891 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.298666 1.284039 -0.0032130396 1.3178129 0.037459993 4.487438 3 1.298687 1.284070 0.0085280578 -0.8200788 0.021968523 4.779186 4 1.298892 1.284331 0.0070322433 5.2464533 0.018021928 6.870093 6 1.301200 1.286912 -0.0085582106 -0.2232621 0.023593516 5.496646 7 1.301451 1.287009 -0.0146602953 0.5220676 0.037768366 5.852631 8 1.301304 1.286999 0.0705786912 -3.1362550 0.049983611 4.061515 10 1.303030 1.288805 0.0063295488 3.0243028 0.016937344 7.743013 11 1.302938 1.288779 -0.0042930172 2.5052533 0.013557047 8.049654 12 1.302937 1.288879 0.0045541432 7.7887380 0.009145326 5.514813 14 1.302583 1.288235 -0.0016381898 0.7878001 0.005320366 7.180220 15 1.302621 1.288224 -0.0078532858 -0.9502099 0.021407724 3.118801 19 1.302192 1.287282 0.0063222192 1.5909495 0.023158488 7.274262 20 1.301987 1.286952 0.0009282251 -2.2679550 0.007796408 10.699093 22 1.301765 1.286640 -0.0025987531 -1.0590704 0.012272153 3.373189 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.474 co2l1 = 0.373 co2l0 = 0.133" [1] "co2l0 = -122.94 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "34 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "96 out of 1217 1-min values rejected as stack air" [1] "39 out of 1159 Line 1 1-min values rejected as stack air" [1] "57 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"