[1] "2025-04-29 17:27:33 MDT" [1] "1213A" "121211" "d346" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121211a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 54540 63 [1] 54540 [1] 54540 [1] "testing skipping spike filter" [1] 54540 [1] 54540 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:27:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.792" [1] "Removing 2 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "95 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.792" [1] "Removing 2 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "95 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:27:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:27:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:27:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:27:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 95 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 806 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:27:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.375 co2off = 379.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 220 229 0.5825498 0.5888091 0.5863752 2 70.19657 39.77885 1.277647 3 2 230 239 0.5895046 0.5957674 0.5933316 2 -12.72658 192.56493 1.278120 5 2 517 526 0.7913148 0.7975822 0.7951451 3 -13.36981 198.46543 1.276916 6 4 527 536 0.7982789 0.8045455 0.8021109 3 69.07220 41.89852 1.277026 7 3 537 546 0.8052409 0.8115035 0.8104605 3 40.60682 102.90780 1.276915 jfcv2 co2slp o2slp co2sd o2sd 2 1.263108 0.004495990 1.8291734 0.01429678 7.095760 3 1.263562 0.029116787 4.2362108 0.07407993 12.667342 5 1.261713 -0.013583399 2.0723488 0.03357375 8.177680 6 1.261793 0.003448733 -0.1282845 0.01193909 4.177012 7 1.261701 0.023167884 5.7253786 0.06244863 7.443504 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.252 co2l1 = 0.376 co2l0 = 0.119" [1] "co2l0 = -121.45 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "192 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "88 out of 737 1-min values rejected as stack air" [1] "54 out of 664 Line 1 1-min values rejected as stack air" [1] "34 out of 73 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"