[1] "2025-04-29 17:25:22 MDT" [1] "1213" "121202" "d337" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 75699 63 [1] 75699 [1] 75699 [1] "testing skipping spike filter" [1] 75699 [1] 75699 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:25:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "56 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "56 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:25:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:25:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:25:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:25:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1202 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:25:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.279 co2off = 381.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 10.55 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 27.55 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 8 9 [4,] 11 13 [5,] 14 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 17 26 0.01194855 0.01820732 0.01577344 2 75.32525 43.25017 3 2 27 36 0.01890281 0.02516204 0.02272793 2 -37.24334 199.90912 5 5 134 160 0.09334144 0.11144097 0.10448565 NA 27.63642 94.30891 8 2 310 319 0.22029265 0.22655203 0.22411759 3 -39.25388 199.72583 9 4 320 329 0.22724734 0.23350628 0.23107224 3 75.38035 44.60270 10 3 330 339 0.23420148 0.24046088 0.23941792 3 37.18457 113.27362 12 5 534 561 0.37981522 0.39895023 0.39150451 NA 22.50442 93.51825 16 4 603 612 0.42892245 0.43518180 0.43274777 2 75.71855 39.49667 17 2 613 622 0.43587731 0.44214468 0.43971064 2 -35.80825 205.07448 18 5 623 632 0.44284028 0.44910061 0.44805729 NA 23.88681 96.59156 21 2 894 903 0.63770961 0.64397080 0.64153541 3 -34.79341 197.20583 22 4 904 912 0.64466667 0.65093058 0.64864305 3 76.09076 35.20783 23 3 913 922 0.65162616 0.65788530 0.65684199 3 38.00698 112.94505 26 4 1161 1170 0.84641898 0.85267824 0.85024395 2 76.31280 42.94861 27 2 1171 1178 0.85337384 0.85824198 0.85650357 2 -34.39200 200.48371 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.284733 1.267948 -0.0112070641 1.2438274 0.02802213 4.5974273 3 1.284907 1.268138 -0.0300765707 0.2417013 0.07980088 4.3521085 5 1.285988 1.269276 0.1253600075 0.4807690 0.73010101 4.5118403 8 1.285483 1.268808 0.1152717570 0.0911321 0.28309050 4.6362069 9 1.285642 1.268955 0.0426699667 0.2766039 0.10539101 2.6693830 10 1.285760 1.269001 0.0527913044 0.2044674 0.13053666 0.9850456 12 1.285039 1.268311 -0.0869239321 0.9915465 0.53951680 9.4574035 16 1.285439 1.268645 0.0016624750 1.1969001 0.01488823 6.4911818 17 1.285491 1.268709 -0.0196810809 1.7800897 0.04873166 8.5784009 18 1.285310 1.268592 -0.0458043849 -9.0195446 0.03243852 12.9259757 21 1.285625 1.268429 0.0147058807 -0.6388340 0.03678245 5.1158720 22 1.285544 1.268542 0.0117069504 4.2854187 0.03133488 15.1904202 23 1.285381 1.268352 0.0007844645 -2.6639603 0.01537622 4.1604891 26 1.286078 1.268900 -0.0046681023 0.5660433 0.01203049 2.4409829 27 1.286068 1.268867 -0.0363730402 1.7187275 0.07276916 4.6072928 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.366 co2l1 = 0.277 co2l0 = 0.092" [1] "co2l0 = -121.76 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "137 out of 934 1-min values rejected as stack air" [1] "61 out of 819 Line 1 1-min values rejected as stack air" [1] "76 out of 115 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"