[1] "2025-04-29 17:24:32 MDT" [1] "1213" "121130" "d335" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82221 63 [1] 82221 [1] 82221 [1] "testing skipping spike filter" [1] 82221 [1] 82221 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:24:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "160 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "161 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:24:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:24:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:24:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:24:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 161 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 68 manually filtered row(s) from a screenall period" [1] "TEMP: 1130 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:24:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.265 co2off = 378.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 14 minutes" [1] "Shortest Cal: 8.08 minutes" [1] "Longest Cal: 34.32 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 3 [2,] 4 6 [3,] 8 9 [4,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 5 54 72 0.03906293 0.05158102 0.04740831 NA 19.07973 98.16432 6 4 266 275 0.18795440 0.19421325 0.19177931 2 73.66966 46.71072 7 2 276 285 0.19490859 0.20116803 0.19873409 2 -45.63959 200.09358 10 2 564 573 0.39665278 0.40291163 0.40047753 3 -43.91566 202.95420 11 4 574 583 0.40360700 0.40986644 0.40743233 3 73.82980 47.72419 12 3 584 593 0.41056175 0.41682138 0.41577812 3 33.28962 112.92887 14 5 695 719 0.48973151 0.50642234 0.50016316 NA 20.78409 86.44821 17 4 854 863 0.60514699 0.61140622 0.60897183 2 74.12996 44.24043 18 2 864 871 0.61210168 0.61836047 0.61569458 2 -42.72018 201.47176 19 5 872 906 0.61924145 0.64307405 0.63333761 NA 23.03021 96.09900 21 5 1034 1061 0.75208681 0.77364624 0.76451042 NA 22.47854 94.23598 23 4 1071 1079 0.78189060 0.78768391 0.78553256 2 74.27170 37.06695 24 2 1080 1088 0.78913348 0.79547474 0.79337376 2 -41.74451 197.50257 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.313391 1.298536 0.289823712 0.24156148 0.97744230 4.083159 6 1.309420 1.294796 -0.002919694 1.01400349 0.02332797 7.520952 7 1.309553 1.294797 0.041758256 -1.78445118 0.10335998 7.207712 10 1.303890 1.289260 -0.037075491 0.81562306 0.09163320 11.166623 11 1.303548 1.288841 -0.004745300 1.61199299 0.01680788 5.484108 12 1.303396 1.288548 -0.004111611 -2.13349576 0.01341788 3.490915 14 1.301189 1.286218 0.220100584 2.51299991 1.14223835 17.992816 17 1.298572 1.283306 -0.004502579 0.32852780 0.01259774 2.757131 18 1.298301 1.283045 -0.036397634 -2.00922047 0.10652028 6.083973 19 1.297451 1.282146 0.101331404 0.06596813 0.81132983 4.425818 21 1.295045 1.279845 0.188154009 0.02866837 1.43930361 5.432692 23 1.294666 1.279367 0.008811607 -0.32566271 0.02552665 4.281533 24 1.294521 1.279236 -0.019064598 0.93708862 0.04999400 3.165479 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.817 co2l1 = 0.264 co2l0 = 0.235" [1] "co2l0 = -122.39 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "151 out of 295 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "144 out of 813 1-min values rejected as stack air" [1] "27 out of 584 Line 1 1-min values rejected as stack air" [1] "117 out of 229 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"