[1] "2025-04-29 17:23:22 MDT"
[1] "1212"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1212/121105.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1212/121106.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1212/121107.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1212/121108.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1212/121109.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1212/121110.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1212/121111.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1212/121112.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1212/121113.html"  
[10] "/net/www/docs/homes/stephens/GO2/1212/121114.html"  
[11] "/net/www/docs/homes/stephens/GO2/1212/121115.html"  
[12] "/net/www/docs/homes/stephens/GO2/1212/121116.html"  
[13] "/net/www/docs/homes/stephens/GO2/1212/121117.html"  
[14] "/net/www/docs/homes/stephens/GO2/1212/121118.html"  
[15] "/net/www/docs/homes/stephens/GO2/1212/121119.html"  
[16] "/net/www/docs/homes/stephens/GO2/1212/121120.html"  
[17] "/net/www/docs/homes/stephens/GO2/1212/121121.html"  
[18] "/net/www/docs/homes/stephens/GO2/1212/121122.html"  
[19] "/net/www/docs/homes/stephens/GO2/1212/lmg_1212.html"
 [1] "/net/www/docs/homes/stephens/GO2/1212/121105.html"
 [2] "/net/www/docs/homes/stephens/GO2/1212/121106.html"
 [3] "/net/www/docs/homes/stephens/GO2/1212/121107.html"
 [4] "/net/www/docs/homes/stephens/GO2/1212/121108.html"
 [5] "/net/www/docs/homes/stephens/GO2/1212/121109.html"
 [6] "/net/www/docs/homes/stephens/GO2/1212/121110.html"
 [7] "/net/www/docs/homes/stephens/GO2/1212/121111.html"
 [8] "/net/www/docs/homes/stephens/GO2/1212/121112.html"
 [9] "/net/www/docs/homes/stephens/GO2/1212/121113.html"
[10] "/net/www/docs/homes/stephens/GO2/1212/121114.html"
[11] "/net/www/docs/homes/stephens/GO2/1212/121115.html"
[12] "/net/www/docs/homes/stephens/GO2/1212/121116.html"
[13] "/net/www/docs/homes/stephens/GO2/1212/121117.html"
[14] "/net/www/docs/homes/stephens/GO2/1212/121118.html"
[15] "/net/www/docs/homes/stephens/GO2/1212/121119.html"
[16] "/net/www/docs/homes/stephens/GO2/1212/121120.html"
[17] "/net/www/docs/homes/stephens/GO2/1212/121121.html"
[18] "/net/www/docs/homes/stephens/GO2/1212/121122.html"
[1] "121105" "121122"
 [1] "121105" "121106" "121107" "121108" "121109" "121110" "121111" "121112"
 [9] "121113" "121114" "121115" "121116" "121117" "121118" "121119" "121120"
[17] "121121" "121122"
[1] "000000" "999999"
[1] "121105_mr_proc.txt, 121105_cal_periods.txt, 121105_cal_param.txt, 340 jogs"
[1] "121106_mr_proc.txt, 121106_cal_periods.txt, 121106_cal_param.txt, 294 jogs"
[1] "Output file empty for 121107"
[1] "121108_mr_proc.txt, 121108_cal_periods.txt, 121108_cal_param.txt, 33 jogs"
[1] "121109_mr_proc.txt, 121109_cal_periods.txt, 121109_cal_param.txt, 969 jogs"
[1] "121110_mr_proc.txt, 121110_cal_periods.txt, 121110_cal_param.txt, 936 jogs"
[1] "121111_mr_proc.txt, 121111_cal_periods.txt, 121111_cal_param.txt, 887 jogs"
[1] "121112_mr_proc.txt, 121112_cal_periods.txt, 121112_cal_param.txt, 1033 jogs"
[1] "121113_mr_proc.txt, 121113_cal_periods.txt, 121113_cal_param.txt, 1078 jogs"
[1] "121114_mr_proc.txt, 121114_cal_periods.txt, 121114_cal_param.txt, 1022 jogs"
[1] "121115_mr_proc.txt, 121115_cal_periods.txt, 121115_cal_param.txt, 791 jogs"
[1] "121116_mr_proc.txt, 121116_cal_periods.txt, 121116_cal_param.txt, 777 jogs"
[1] "121117_mr_proc.txt, 121117_cal_periods.txt, 121117_cal_param.txt, 955 jogs"
[1] "121118_mr_proc.txt, 121118_cal_periods.txt, 121118_cal_param.txt, 1272 jogs"
[1] "121119_mr_proc.txt, 121119_cal_periods.txt, 121119_cal_param.txt, 1376 jogs"
[1] "121120_mr_proc.txt, 121120_cal_periods.txt, 121120_cal_param.txt, 1365 jogs"
[1] "121121_mr_proc.txt, 121121_cal_periods.txt, 121121_cal_param.txt, 1150 jogs"
[1] "121122_mr_proc.txt, 121122_cal_periods.txt, 121122_cal_param.txt, 945 jogs"
[1] "121105" "121122" "d310"   "d327"  
[1] "Calculating derived concentration values"
[1] "2025-04-29 17:23:31 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.773, ave o2scale2 = 0.783"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-29 17:23:35 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-29 17:23:48 MDT"
[1] "2025-04-29 17:23:51 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1"
[1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1212 Valve transient for  Line 1 after Cal = 0 , 0.02 , -0.01 , -0.01 , 0 n = 64"
[1] "1212 Valve transient for  Line 2 after Line 1 = -0.14 , 0.42 , 0.93 , 0.89 , 0.81 n = 39"
[1] "1212 Valve transient for  Line 1 after HS = -1.22 , -0.64 , -0.09 , -0.06 , -0.05 n = 22"
[1] "1212 Valve transient for  Line 1 after MS = 0.18 , 0.13 , 0 , 0.01 , 0.01 n = 31"
[1] "1212 Valve transient for  Line 1 after LT = -0.31 , 1.34 , 3.97 , 4.21 , 3.11 n = 11"
[1] "1212 Valve transient for  HS after Line 2 = 1.29 , 0.66 , 0.02 , 0.01 , 0.01 n = 10"
[1] "1212 Valve transient for  HS after LS = 5.28 , 2.66 , 0.02 , 0 , 0 n = 10"
[1] "1212 Valve transient for  MS after LS = 1.71 , 0.84 , 0 , 0 , 0 n = 7"
[1] "1212 Valve transient for  MS after LT = 0.8 , 0.39 , -0.02 , -0.01 , 0 n = 3"
[1] "1212 Valve transient for  LS after Line 1 = 0 , 0 , 0 , NA , NA n = 1"
[1] "1212 Valve transient for  LS after Line 2 = -1.57 , -0.79 , 0.01 , 0 , 0 n = 9"
[1] "1212 Valve transient for  LS after HS = -5 , -2.5 , -0.01 , 0 , 0 n = 13"
[1] "1212 Valve transient for  LT after Line 1 = -0.04 , -0.02 , 0 , NA , NA n = 1"
[1] "1212 Valve transient for  LT after HS = -0.85 , -0.29 , 0.23 , 0.16 , 0.11 n = 3"
[1] "1212 Valve transient for  LT after LS = 1.39 , 0.88 , 0.36 , 0.33 , 0.28 n = 3"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "369 out of 3986 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3617 out of 12946 1-min values rejected as stack air"
[1] "2442 out of 11576 Line 1 1-min values rejected as stack air"
[1] "1175 out of 1370 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1212loxy.d310"
[1] "LMG1212loxy.d311"
[1] "LMG1212loxy.d312"
[1] "LMG1212loxy.d313"
[1] "LMG1212loxy.d314"
[1] "LMG1212loxy.d323"
[1] "LMG1212loxy.d324"
[1] "LMG1212loxy.d325"
[1] "LMG1212loxy.d326"
[1] "LMG1212loxy.d327"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.1371742
 [2,]  97.5 0.5486968
 [3,] 102.5 0.4115226
 [4,] 107.5 0.4115226
 [5,] 117.5 0.5486968
 [6,] 122.5 0.4115226
 [7,] 127.5 0.4115226
 [8,] 132.5 1.0973937
 [9,] 137.5 0.8230453
[10,] 142.5 1.2345679
[11,] 147.5 1.0973937
[12,] 152.5 0.2743484
[13,] 157.5 0.6858711
[14,] 162.5 0.4115226
[15,] 167.5 0.1371742
[16,] 177.5 0.1371742
[17,] 182.5 0.4115226
[18,] 187.5 0.5486968
[19,] 192.5 0.5486968
[20,] 197.5 0.2743484
[21,] 202.5 0.5486968
[22,] 207.5 0.2743484
[23,] 212.5 0.1371742
[24,] 217.5 0.6858711
[25,] 222.5 0.4115226
[26,] 227.5 0.1371742
[27,] 232.5 0.5486968
[28,] 237.5 0.5486968
[29,] 242.5 0.4115226
[30,] 247.5 0.5486968
[31,] 252.5 0.8230453
[32,] 257.5 0.2743484
[33,] 262.5 0.1371742
[34,] 267.5 0.6858711
[35,] 272.5 0.1371742
[36,] 277.5 0.2743484
[37,] 282.5 0.2743484
[38,] 297.5 0.1371742
[39,] 302.5 0.2743484
[40,] 307.5 0.8230453
[41,] 312.5 0.2743484
[42,] 317.5 0.6858711
[43,] 322.5 0.5486968
[44,] 327.5 0.4115226
[45,] 332.5 0.6858711
[46,] 342.5 0.5486968
[47,] 347.5 0.9602195
[48,] 352.5 0.2743484
[49,] 357.5 0.4115226
[50,] 362.5 0.1371742
[51,] 372.5 0.8230453
[52,] 377.5 0.1371742
[53,] 382.5 0.1371742
[54,] 387.5 0.5486968
[55,] 392.5 0.4115226
[56,] 397.5 0.2743484
[57,] 402.5 0.4115226
[58,] 407.5 0.5486968
[59,] 412.5 0.1371742
[60,] 417.5 0.1371742
[61,] 422.5 0.2743484
[62,] 427.5 0.1371742
[63,] 432.5 0.1371742
[64,] 442.5 0.1371742
       [,1]      [,2]
 [1,]  92.5 0.2743484
 [2,] 102.5 0.1371742
 [3,] 107.5 0.4115226
 [4,] 112.5 0.2743484
 [5,] 117.5 0.2743484
 [6,] 122.5 0.8230453
 [7,] 127.5 0.2743484
 [8,] 132.5 0.9602195
 [9,] 137.5 0.2743484
[10,] 142.5 0.2743484
[11,] 147.5 0.1371742
[12,] 152.5 0.1371742
[13,] 182.5 0.1371742
[14,] 202.5 0.4115226
[15,] 207.5 1.5089163
[16,] 212.5 3.0178326
[17,] 217.5 1.2345679
[18,] 222.5 2.1947874
[19,] 227.5 0.6858711
[20,] 232.5 0.8230453
[21,] 237.5 0.5486968
[22,] 242.5 0.1371742
[23,] 257.5 0.5486968
[24,] 262.5 0.5486968
[25,] 267.5 0.4115226
[26,] 272.5 0.5486968
[27,] 277.5 0.1371742
[28,] 282.5 0.8230453
[29,] 287.5 0.8230453
[30,] 292.5 0.8230453
[31,] 297.5 1.2345679
[32,] 302.5 0.2743484
[33,] 307.5 0.8230453
[34,] 312.5 0.4115226
[35,] 322.5 0.4115226
[36,] 327.5 1.0973937
[37,] 332.5 0.9602195
[38,] 337.5 0.2743484
[39,] 342.5 0.4115226
[40,] 347.5 1.3717421
[41,] 352.5 0.6858711
[42,] 357.5 0.1371742
[43,] 362.5 0.2743484
[44,] 367.5 0.4115226
[45,] 372.5 0.1371742
[46,] 377.5 0.9602195
[47,] 382.5 0.5486968
[48,] 387.5 0.4115226
[49,] 392.5 0.5486968
[50,] 397.5 0.2743484
[51,] 402.5 0.2743484
[52,] 407.5 0.1371742
[53,] 412.5 0.1371742
[54,] 417.5 0.0000000
[55,] 422.5 0.1371742
[56,] 432.5 0.1371742
[57,] 437.5 0.1371742
[58,] 442.5 0.1371742
       [,1]      [,2]
 [1,] 102.5 0.0000000
 [2,] 127.5 0.1371742
 [3,] 217.5 0.4115226
 [4,] 222.5 1.7832647
 [5,] 227.5 2.7434842
 [6,] 257.5 0.1371742
 [7,] 267.5 0.4115226
 [8,] 272.5 0.4115226
 [9,] 277.5 0.2743484
[10,] 282.5 0.1371742
[11,] 287.5 0.2743484
[12,] 292.5 0.4115226
[13,] 297.5 0.2743484
[14,] 302.5 0.1371742
[15,] 312.5 0.1371742
[16,] 317.5 1.6460905
[17,] 322.5 0.8230453
[18,] 327.5 1.0973937
[19,] 337.5 0.2743484
[20,] 342.5 0.2743484
[21,] 347.5 0.1371742
[22,] 352.5 0.1371742
[23,] 357.5 0.0000000
[24,] 362.5 0.2743484
[25,] 367.5 0.4115226
[26,] 372.5 1.2345679
[27,] 377.5 0.6858711
[28,] 382.5 1.2345679
[29,] 387.5 0.1371742
[30,] 392.5 0.1371742
       [,1]      [,2]
 [1,] 117.5 0.0000000
 [2,] 272.5 0.1371742
 [3,] 287.5 0.1371742
 [4,] 292.5 0.6858711
 [5,] 297.5 0.2743484
 [6,] 317.5 0.9602195
 [7,] 322.5 1.6460905
 [8,] 327.5 5.0754458
 [9,] 332.5 5.7613169
[10,] 342.5 1.0973937
[11,] 347.5 0.4115226
[12,] 352.5 0.1371742
[13,] 357.5 0.2743484
[14,] 362.5 0.0000000
[15,] 367.5 0.6858711
[16,] 372.5 1.6460905
[17,] 377.5 1.3717421
[18,] 382.5 3.0178326
[19,] 387.5 0.2743484
[1] "making cruise html"
[1] "2025-04-29 17:24:13 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"