[1] "2025-04-29 17:21:07 MDT" [1] "1212" "121120" "d325" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:21:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.778" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "71 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:21:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:21:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:21:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:21:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 71 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1365 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:21:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.409 co2off = 371.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.71 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 68 76 0.04912384 0.05538657 0.05320015 2 68.936052 31.35759 4 2 77 83 0.05608218 0.06025848 0.05886713 2 -7.064837 199.87793 7 2 359 367 0.25787318 0.26344068 0.26135313 3 -7.038393 205.30145 8 4 368 377 0.26483148 0.27110472 0.26866472 3 68.987352 39.42658 9 3 378 387 0.27180017 0.27805917 0.27701610 3 42.855289 112.76124 12 4 650 659 0.46665440 0.47291800 0.47048309 2 69.013047 38.74055 13 2 660 669 0.47361620 0.47987899 0.47744218 2 -6.929594 201.87256 14 5 670 679 0.48057523 0.48683776 0.48579451 NA 32.640562 86.01609 17 2 924 933 0.67541719 0.68168056 0.67924414 3 -6.394539 198.61994 18 4 934 943 0.68238426 0.68864722 0.68621021 3 68.998984 49.17998 19 3 944 951 0.68934259 0.69560532 0.69525754 3 43.031083 112.90351 22 4 1202 1211 0.88425503 0.89051817 0.88808095 2 69.148453 43.01970 23 2 1212 1221 0.89121354 0.89747671 0.89504019 2 -6.572156 199.98617 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.305443 1.288141 -0.0037783677 6.2118305 0.009384671 24.2597735 4 1.305474 1.288083 -0.0376066069 -0.1449450 0.064377148 4.6474484 7 1.304869 1.287964 -0.0032664204 1.9278990 0.010627004 7.3943435 8 1.304430 1.287472 0.0027873262 -1.1949773 0.008682773 4.6341897 9 1.304381 1.287343 0.0010975984 1.0960906 0.010103534 4.6549384 12 1.302374 1.285951 -0.0006254543 3.1913338 0.006653556 10.2808784 13 1.302529 1.286113 -0.0038825814 0.7714381 0.020377876 3.3983245 14 1.302444 1.286007 -0.0927474722 -5.3961537 0.065672542 7.1065512 17 1.302221 1.285485 -0.0174510681 1.3248934 0.043388621 6.1621427 18 1.301997 1.285332 0.0097662692 0.2137524 0.029065193 3.8518677 19 1.302249 1.285577 -0.0011652342 -1.0667283 0.003308527 0.7555166 22 1.299321 1.282795 0.0036837625 0.9489942 0.012588426 3.7393423 23 1.299291 1.282791 0.0028202737 0.4725952 0.008504922 7.0716815 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.123 co2l1 = 0.409 co2l0 = 0.036" [1] "co2l0 = -121.44 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "27 out of 155 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "128 out of 1180 1-min values rejected as stack air" [1] "0 out of 1052 Line 1 1-min values rejected as stack air" [1] "128 out of 128 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"