[1] "2025-04-29 17:19:52 MDT" [1] "1212" "121118" "d323" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121118a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84207 63 [1] 84207 [1] 84207 [1] "testing skipping spike filter" [1] 84207 [1] 84207 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:19:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "130 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.791" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "129 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:19:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:19:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:20:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:20:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 129 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1272 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:20:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.418 co2off = 368.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.18 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 152 161 0.1203591 0.1266227 0.1241867 2 68.010883 41.83184 4 2 162 171 0.1273183 0.1335779 0.1311437 2 -6.434383 201.30156 7 2 435 444 0.3291170 0.3353796 0.3329451 3 -6.656539 197.03973 8 4 445 454 0.3360753 0.3423379 0.3399037 3 68.075641 40.26109 9 5 455 464 0.3430367 0.3492998 0.3482540 NA 32.503437 95.72676 10 3 465 474 0.3499953 0.3562579 0.3552138 3 42.445813 113.65334 13 4 716 723 0.5379442 0.5442030 0.5417690 2 67.991219 43.34399 14 2 724 733 0.5449012 0.5511610 0.5487270 2 -6.446453 196.56434 17 5 739 746 0.6097958 0.6146678 0.6143200 NA 32.521500 94.19488 20 4 991 1000 0.7965301 0.8027929 0.8003583 2 68.092016 40.19048 21 2 1001 1009 0.8034884 0.8090532 0.8069664 2 -6.011009 204.02013 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.286552 1.269014 -0.0065881875 -0.26445892 0.01675181 1.835963 4 1.286446 1.268880 -0.0069864502 0.61106527 0.02249125 2.535413 7 1.282736 1.264988 0.0090365550 1.51816419 0.02336612 5.835629 8 1.282683 1.264935 0.0013875540 -0.50302505 0.01042853 5.663809 9 1.282583 1.264864 -0.0423883318 1.89236302 0.03014043 2.863568 10 1.282525 1.264756 0.0088743018 1.65837835 0.02391997 2.221150 13 1.279743 1.261925 -0.0067226792 0.99138238 0.01973127 3.714918 14 1.279977 1.262156 -0.0001504943 -0.01210127 0.01930731 2.318223 17 1.280141 1.262107 1.0137715831 4.23245384 0.71789016 2.997785 20 1.282405 1.264595 -0.0041706458 0.62912082 0.01266951 3.763265 21 1.282490 1.264628 0.0070686836 1.26021927 0.01858400 3.694111 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.99 co2l1 = 0.417 co2l0 = 0.033" [1] "co2l0 = -121.89 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "95 out of 325 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "230 out of 1110 1-min values rejected as stack air" [1] "134 out of 991 Line 1 1-min values rejected as stack air" [1] "96 out of 119 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"