[1] "2025-04-29 17:17:09 MDT" [1] "1212" "121114" "d319" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121114a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:17:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "413 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "413 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:17:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:17:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:17:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:17:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 413 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1022 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:17:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.419 co2off = 390.61 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.01 minutes" [1] "Average Cal: 6.47 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 166 171 0.1559784 0.1594571 0.1584138 3 -6.980781 203.05224 4 4 172 177 0.1601526 0.1636331 0.1625889 3 66.296422 53.17862 5 3 178 185 0.1685051 0.1733734 0.1730257 3 41.122292 111.08497 8 4 387 392 0.3647588 0.3682360 0.3671927 2 66.519047 39.25944 9 2 393 398 0.3689316 0.3751939 0.3727599 2 -7.023937 211.26241 12 2 618 627 0.5707269 0.5769896 0.5745546 3 -7.956633 202.19789 13 4 628 634 0.5776850 0.5839476 0.5813048 3 66.951174 35.16755 15 3 642 647 0.5916049 0.5978796 0.5982274 3 41.103656 123.63478 18 4 834 839 0.7816690 0.7851470 0.7841036 2 66.912859 45.05440 19 2 840 845 0.7886245 0.7921023 0.7910591 2 -7.386766 205.64248 22 2 1014 1018 0.9890343 0.9918160 0.9911205 2 -7.146021 197.27979 23 4 1019 1022 0.9952969 0.9973832 0.9970355 2 66.820688 39.44536 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.291583 1.273499 3.556805e-03 1.55338880 0.004969831 2.147061 4 1.291395 1.273345 1.220957e-02 -3.54543241 0.017027503 9.170653 5 1.291339 1.273281 6.258407e-03 2.74232179 0.013005748 1.941619 8 1.296837 1.279037 -3.987244e-03 -2.60285790 0.005388398 3.580643 9 1.297007 1.279231 -1.054514e-02 3.38039369 0.039641689 11.985639 12 1.300690 1.283112 -1.635154e-04 0.01630467 0.007312190 5.153300 13 1.301282 1.283674 1.433469e-02 0.89208995 0.046706535 3.200738 15 1.300575 1.282984 4.348844e-05 2.94852848 0.003243784 2.088399 18 1.302208 1.284674 -5.734193e-03 3.68953934 0.007488598 4.799813 19 1.302105 1.284626 2.402685e-03 6.05764467 0.004836217 9.571475 22 1.299721 1.282201 3.650801e-03 -2.45881854 0.003683967 2.502245 23 1.299653 1.282071 2.808521e-02 3.02568676 0.019887378 2.142515 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.4 co2l1 = 0.419 co2l0 = 0.054" [1] "co2l0 = -121.9 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 137 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "101 out of 897 1-min values rejected as stack air" [1] "4 out of 800 Line 1 1-min values rejected as stack air" [1] "97 out of 97 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"