[1] "2025-04-29 17:15:47 MDT" [1] "1212" "121112" "d317" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121112a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:15:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "401 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "403 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:15:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:15:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:16:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:16:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 403 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1033 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:16:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.429 co2off = 392.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.01 minutes" [1] "Average Cal: 6.95 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 65 73 0.06599722 0.07156467 0.06947495 2 -7.737375 201.97398 4 4 74 79 0.07504167 0.07852297 0.07747687 2 65.811203 38.32922 9 4 285 293 0.27407714 0.28033987 0.27775561 2 65.691729 41.29881 10 2 294 299 0.28312153 0.28729514 0.28590377 2 -7.275381 203.84018 13 2 504 509 0.48558681 0.48906811 0.48802200 3 -6.893484 204.29228 14 4 510 517 0.49115674 0.49602549 0.49428645 3 65.435500 41.30247 15 3 518 522 0.50019812 0.50298015 0.50367594 3 40.600583 135.35732 18 4 692 696 0.69153738 0.69710527 0.69548009 2 65.344917 42.29394 19 2 697 706 0.69849751 0.70475477 0.70232193 2 -6.447055 199.71788 23 2 925 932 0.90184340 0.90671759 0.90497827 2 -6.162302 202.45025 24 4 933 939 0.90880373 0.91297677 0.91158564 2 65.339488 42.26935 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.302890 1.285151 -0.0054938685 0.51557210 0.012651169 4.573756 4 1.302606 1.284818 0.0010766792 -0.97502536 0.002278394 1.550832 9 1.295345 1.277250 -0.0031954154 -0.36431937 0.008898124 1.437095 10 1.294933 1.276801 -0.0041620375 0.35615987 0.008064087 2.603498 13 1.281838 1.263044 0.0009299761 1.32228949 0.002219923 2.586677 14 1.281140 1.262342 -0.0010055455 0.90734254 0.003478730 2.725671 15 1.281022 1.262291 0.0078633566 5.29224480 0.007939550 5.309989 18 1.275185 1.256033 -0.0018088416 0.95059940 0.006315078 3.100668 19 1.274900 1.255750 -0.0010788326 0.19420890 0.006385097 1.045601 23 1.272683 1.253410 -0.0080282714 0.24822280 0.015424636 1.498159 24 1.272736 1.253475 0.0042494096 -0.07752615 0.007074437 1.804923 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.279 co2l1 = 0.428 co2l0 = 0.04" [1] "co2l0 = -121.81 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "69 out of 295 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "226 out of 860 1-min values rejected as stack air" [1] "183 out of 757 Line 1 1-min values rejected as stack air" [1] "43 out of 103 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"