[1] "2025-04-29 17:15:03 MDT" [1] "1212" "121111" "d316" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:15:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "541 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.78" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "541 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:15:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:15:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:15:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:15:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 541 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with low FLSP" [1] "TEMP: 887 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:15:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.425 co2off = 382.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 4.51 minutes" [1] "Average Cal: 5.51 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 5 [4,] 6 7 [5,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 14 18 0.02187685 0.02744418 0.02674874 2 64.989500 40.75568 3 2 19 24 0.02813950 0.03162037 0.03057648 2 -7.602078 204.45421 6 2 233 240 0.23132642 0.23619499 0.23445594 2 -7.622615 203.75702 7 4 241 245 0.24037497 0.24315645 0.24246117 2 65.165542 44.44071 11 4 433 436 0.43885625 0.44511571 0.44476794 1 65.222406 47.00306 15 2 565 569 0.64898032 0.65176209 0.65106685 2 -7.645229 207.36018 16 4 570 573 0.65872031 0.66080680 0.66045898 2 65.489531 41.91125 20 4 746 750 0.86000576 0.86278727 0.86209193 2 65.657458 42.42866 21 2 751 757 0.86348449 0.86974711 0.86793766 2 -7.675497 196.74178 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.298662 1.280289 -0.0054608253 5.193918e-04 0.006031493 0.0005201601 3 1.298833 1.280498 0.0108664987 9.004830e-01 0.016917722 1.7243987654 6 1.298728 1.280450 -0.0006507715 -1.764181e-01 0.002596698 2.0168782282 7 1.298677 1.280393 0.0025594775 5.394704e+00 0.002605083 5.4405914726 11 1.299147 1.280977 0.0024336467 1.402577e-15 0.001723573 0.0000000000 15 1.301564 1.283515 -0.0047125215 5.433275e+00 0.004862296 5.4718753773 16 1.301870 1.283874 0.0074248159 3.413417e+00 0.005259107 2.4177735415 20 1.304654 1.286896 0.0007802279 2.810361e+00 0.001153008 2.9385352575 21 1.304822 1.286991 -0.0046864769 -6.942965e-01 0.017393350 3.4355583624 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.566 co2l1 = 0.425 co2l0 = 0" [1] "co2l0 = -121.92 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "147 out of 610 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "463 out of 765 1-min values rejected as stack air" [1] "429 out of 688 Line 1 1-min values rejected as stack air" [1] "34 out of 77 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"