[1] "2025-04-29 17:14:02 MDT" [1] "1212" "121109" "d314" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121109a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:14:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "465 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "465 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:14:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:14:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:14:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:14:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 465 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 969 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:14:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.42 co2off = 393.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 6.94 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 116 120 0.1549429 0.1577280 0.1570326 1 -9.381875 195.29405 7 2 295 303 0.3532450 0.3595080 0.3574182 3 -9.254517 204.56219 8 4 304 309 0.3622894 0.3657668 0.3647238 3 64.723094 41.66750 9 3 310 314 0.3678576 0.3734230 0.3741197 3 39.343646 112.88495 12 4 496 501 0.5620045 0.5682634 0.5658292 2 64.868281 48.77901 13 2 502 510 0.5689622 0.5745260 0.5724397 2 -9.072973 202.72739 17 2 721 727 0.7703900 0.7766526 0.7744256 3 -8.854364 198.28810 18 4 728 735 0.7773479 0.7822166 0.7804777 3 64.932292 44.17107 19 3 736 744 0.7849987 0.7905625 0.7898672 3 39.539554 111.01063 22 4 946 953 0.9790798 0.9839514 0.9822127 2 65.035438 42.39767 23 2 954 962 0.9867330 0.9922975 0.9902109 2 -8.832223 200.76199 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.295997 1.277225 0.0022470040 4.88787450 0.002250000 4.92776351 7 1.297073 1.278487 0.0024393933 -0.88657285 0.013065234 2.37948687 8 1.297053 1.278507 0.0089743514 2.13111402 0.012430065 3.09888809 9 1.297089 1.278484 0.0118981080 3.39481496 0.014336134 3.43551296 12 1.296048 1.277417 0.0016984902 -1.75506768 0.006053042 7.91833288 13 1.295791 1.277167 -0.0009874772 1.38797283 0.008829907 7.33016585 17 1.294908 1.276365 -0.0119942708 1.68438944 0.037765209 5.56206572 18 1.294923 1.276306 0.0054622718 -0.55094507 0.016361286 2.23090420 19 1.294990 1.276456 0.0089633104 -0.08268455 0.021642076 0.08369309 22 1.298226 1.279846 -0.0034057023 0.57051620 0.008584051 3.31606189 23 1.298371 1.280034 -0.0051129594 0.94299312 0.011937929 3.78058281 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.152 co2l1 = 0.42 co2l0 = 0.068" [1] "co2l0 = -121.88 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "53 out of 346 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "293 out of 816 1-min values rejected as stack air" [1] "219 out of 723 Line 1 1-min values rejected as stack air" [1] "74 out of 93 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"