[1] "2017-04-05 22:05:50 MDT"
[1] "1211"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1211/121011.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1211/121012.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1211/121013.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1211/121014.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1211/121015.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1211/121016.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1211/121017.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1211/121018.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1211/121019.html"  
[10] "/net/www/docs/homes/stephens/GO2/1211/121020.html"  
[11] "/net/www/docs/homes/stephens/GO2/1211/121021.html"  
[12] "/net/www/docs/homes/stephens/GO2/1211/121022.html"  
[13] "/net/www/docs/homes/stephens/GO2/1211/121023.html"  
[14] "/net/www/docs/homes/stephens/GO2/1211/121024.html"  
[15] "/net/www/docs/homes/stephens/GO2/1211/121025.html"  
[16] "/net/www/docs/homes/stephens/GO2/1211/121026.html"  
[17] "/net/www/docs/homes/stephens/GO2/1211/121027.html"  
[18] "/net/www/docs/homes/stephens/GO2/1211/121028.html"  
[19] "/net/www/docs/homes/stephens/GO2/1211/121029.html"  
[20] "/net/www/docs/homes/stephens/GO2/1211/lmg_1211.html"
 [1] "/net/www/docs/homes/stephens/GO2/1211/121011.html"
 [2] "/net/www/docs/homes/stephens/GO2/1211/121012.html"
 [3] "/net/www/docs/homes/stephens/GO2/1211/121013.html"
 [4] "/net/www/docs/homes/stephens/GO2/1211/121014.html"
 [5] "/net/www/docs/homes/stephens/GO2/1211/121015.html"
 [6] "/net/www/docs/homes/stephens/GO2/1211/121016.html"
 [7] "/net/www/docs/homes/stephens/GO2/1211/121017.html"
 [8] "/net/www/docs/homes/stephens/GO2/1211/121018.html"
 [9] "/net/www/docs/homes/stephens/GO2/1211/121019.html"
[10] "/net/www/docs/homes/stephens/GO2/1211/121020.html"
[11] "/net/www/docs/homes/stephens/GO2/1211/121021.html"
[12] "/net/www/docs/homes/stephens/GO2/1211/121022.html"
[13] "/net/www/docs/homes/stephens/GO2/1211/121023.html"
[14] "/net/www/docs/homes/stephens/GO2/1211/121024.html"
[15] "/net/www/docs/homes/stephens/GO2/1211/121025.html"
[16] "/net/www/docs/homes/stephens/GO2/1211/121026.html"
[17] "/net/www/docs/homes/stephens/GO2/1211/121027.html"
[18] "/net/www/docs/homes/stephens/GO2/1211/121028.html"
[19] "/net/www/docs/homes/stephens/GO2/1211/121029.html"
[1] "121011" "121029"
 [1] "121011" "121012" "121013" "121014" "121015" "121016" "121017" "121018"
 [9] "121019" "121020" "121021" "121022" "121023" "121024" "121025" "121026"
[17] "121027" "121028" "121029"
[1] "000000" "999999"
[1] "121011_mr_proc.txt, 121011_cal_periods.txt, 121011_cal_param.txt,706jogs"
[1] "121012_mr_proc.txt, 121012_cal_periods.txt, 121012_cal_param.txt,1298jogs"
[1] "121013_mr_proc.txt, 121013_cal_periods.txt, 121013_cal_param.txt,109jogs"
[1] "121014_mr_proc.txt, 121014_cal_periods.txt, 121014_cal_param.txt,494jogs"
[1] "121015_mr_proc.txt, 121015_cal_periods.txt, 121015_cal_param.txt,846jogs"
[1] "121016_mr_proc.txt, 121016_cal_periods.txt, 121016_cal_param.txt,1037jogs"
[1] "121017_mr_proc.txt, 121017_cal_periods.txt, 121017_cal_param.txt,931jogs"
[1] "121018_mr_proc.txt, 121018_cal_periods.txt, 121018_cal_param.txt,763jogs"
[1] "121019_mr_proc.txt, 121019_cal_periods.txt, 121019_cal_param.txt,992jogs"
[1] "121020_mr_proc.txt, 121020_cal_periods.txt, 121020_cal_param.txt,899jogs"
[1] "121021_mr_proc.txt, 121021_cal_periods.txt, 121021_cal_param.txt,1000jogs"
[1] "121022_mr_proc.txt, 121022_cal_periods.txt, 121022_cal_param.txt,750jogs"
[1] "121023_mr_proc.txt, 121023_cal_periods.txt, 121023_cal_param.txt,958jogs"
[1] "121024_mr_proc.txt, 121024_cal_periods.txt, 121024_cal_param.txt,1225jogs"
[1] "121025_mr_proc.txt, 121025_cal_periods.txt, 121025_cal_param.txt,1177jogs"
[1] "121026_mr_proc.txt, 121026_cal_periods.txt, 121026_cal_param.txt,1227jogs"
[1] "121027_mr_proc.txt, 121027_cal_periods.txt, 121027_cal_param.txt,862jogs"
[1] "121028_mr_proc.txt, 121028_cal_periods.txt, 121028_cal_param.txt,68jogs"
[1] "121029_mr_proc.txt, 121029_cal_periods.txt, 121029_cal_param.txt,198jogs"
[1] "121011" "121029" "d285"   "d303"  
[1] "Calculating derived concentration values"
[1] "2017-04-05 22:06:20 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.79"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-05 22:06:33 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-05 22:06:55 MDT"
[1] "2017-04-05 22:07:00 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -455"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -549.7"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -633.6"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.88 O2 = -579"
[1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.24 O2 = -589.1"
[1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.11 O2 = -557.8"
[1] "Plotting jog shapes"
[1] "1211 Valve transient for  Line 1 after Line 2 = 1.99 , 1.52 , -0.11 , -0.88 , -0.54 n = 6"
[1] "1211 Valve transient for  Line 1 after Cal = -0.21 , 0 , -0.04 , -0.01 , -0.01 n = 62"
[1] "1211 Valve transient for  Line 2 after Line 1 = -0.24 , 0.54 , 1.05 , 0.82 , 0.61 n = 37"
[1] "1211 Valve transient for  Line 1 after HS = -1.2 , -0.66 , -0.12 , -0.1 , -0.08 n = 22"
[1] "1211 Valve transient for  Line 1 after MS = 0.2 , 0.06 , -0.03 , 0 , 0.02 n = 28"
[1] "1211 Valve transient for  Line 1 after LT = -0.49 , 0.93 , 3.27 , 3.55 , 2.73 n = 12"
[1] "1211 Valve transient for  HS after Line 1 = 1.34 , 0.66 , -0.01 , 0 , 0 n = 2"
[1] "1211 Valve transient for  HS after Line 2 = 0.94 , 0.46 , 0 , 0 , 0.01 n = 12"
[1] "1211 Valve transient for  HS after LS = 2.53 , 1.28 , 0.02 , 0.01 , 0.01 n = 14"
[1] "1211 Valve transient for  MS after LS = 1.63 , 0.81 , -0.02 , -0.01 , 0 n = 7"
[1] "1211 Valve transient for  MS after LT = -0.02 , -0.01 , -0.02 , -0.01 , 0 n = 5"
[1] "1211 Valve transient for  LS after Line 1 = -0.01 , -0.01 , 0 , -0.01 , 0 n = 3"
[1] "1211 Valve transient for  LS after Line 2 = -1.84 , -0.92 , 0 , 0 , 0 n = 9"
[1] "1211 Valve transient for  LS after HS = -4.99 , -2.51 , -0.02 , 0 , 0 n = 10"
[1] "1211 Valve transient for  LT after Line 1 = NA , NA , NA , NA , NA n = 0"
[1] "1211 Valve transient for  LT after HS = -1.46 , -0.92 , -0.35 , -0.28 , -0.21 n = 4"
[1] "1211 Valve transient for  LT after LS = 0.51 , 0.04 , -0.38 , -0.3 , -0.22 n = 4"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "475 out of 4150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3675 out of 12952 1-min values rejected as stack air"
[1] "2422 out of 11485 Line 1 1-min values rejected as stack air"
[1] "1253 out of 1467 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1211loxy.d285"
[1] "LMG1211loxy.d286"
[1] "LMG1211loxy.d287"
[1] "LMG1211loxy.d288"
[1] "LMG1211loxy.d289"
[1] "LMG1211loxy.d290"
[1] "LMG1211loxy.d291"
[1] "LMG1211loxy.d292"
[1] "LMG1211loxy.d295"
[1] "LMG1211loxy.d296"
[1] "LMG1211loxy.d301"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.4474273
 [2,]  97.5 0.6711409
 [3,] 102.5 0.4474273
 [4,] 107.5 0.2237136
 [5,] 112.5 0.4474273
 [6,] 117.5 0.8948546
 [7,] 122.5 1.3422819
 [8,] 127.5 1.5659955
 [9,] 132.5 0.4474273
[10,] 137.5 0.8948546
[11,] 142.5 1.3422819
[12,] 152.5 0.6711409
[13,] 157.5 0.4474273
[14,] 162.5 0.8948546
[15,] 167.5 0.6711409
[16,] 172.5 0.4474273
[17,] 177.5 0.2237136
[18,] 182.5 0.6711409
[19,] 187.5 0.0000000
[20,] 192.5 0.2237136
[21,] 202.5 0.6711409
[22,] 207.5 0.2237136
[23,] 212.5 0.2237136
[24,] 217.5 0.2237136
[25,] 222.5 0.4474273
[26,] 227.5 1.1185682
[27,] 232.5 0.8948546
[28,] 237.5 0.4474273
[29,] 242.5 0.6711409
[30,] 247.5 1.7897092
[31,] 252.5 0.4474273
[32,] 257.5 0.8948546
[33,] 262.5 0.8948546
[34,] 267.5 0.8948546
[35,] 272.5 0.6711409
[36,] 277.5 0.6711409
[37,] 282.5 0.2237136
[38,] 287.5 0.4474273
[39,] 292.5 0.2237136
[40,] 297.5 0.4474273
[41,] 302.5 0.4474273
[42,] 307.5 0.4474273
[43,] 312.5 1.3422819
[44,] 317.5 1.5659955
[45,] 322.5 2.6845638
[46,] 327.5 1.3422819
[47,] 332.5 1.1185682
[48,] 337.5 0.4474273
[49,] 342.5 0.6711409
[50,] 347.5 1.1185682
[51,] 357.5 0.4474273
[52,] 362.5 0.4474273
[53,] 367.5 0.4474273
[54,] 372.5 1.3422819
[55,] 377.5 0.8948546
[56,] 382.5 0.4474273
[57,] 387.5 1.5659955
[58,] 392.5 1.5659955
[59,] 397.5 0.8948546
[60,] 402.5 1.1185682
[61,] 407.5 0.2237136
[62,] 412.5 0.6711409
[63,] 417.5 0.2237136
[64,] 422.5 0.4474273
[65,] 427.5 0.2237136
[66,] 432.5 0.4474273
[67,] 437.5 0.4474273
       [,1]      [,2]
 [1,] 107.5 0.2237136
 [2,] 112.5 0.4474273
 [3,] 117.5 0.8948546
 [4,] 122.5 0.8948546
 [5,] 127.5 0.8948546
 [6,] 132.5 0.8948546
 [7,] 147.5 0.2237136
 [8,] 167.5 0.2237136
 [9,] 172.5 0.2237136
[10,] 177.5 0.2237136
[11,] 182.5 0.4474273
[12,] 187.5 0.4474273
[13,] 192.5 0.8948546
[14,] 197.5 0.6711409
[15,] 202.5 0.4474273
[16,] 207.5 0.6711409
[17,] 212.5 1.3422819
[18,] 217.5 5.8165548
[19,] 222.5 5.3691275
[20,] 227.5 4.2505593
[21,] 232.5 2.2371365
[22,] 237.5 5.8165548
[23,] 242.5 2.0134228
[24,] 252.5 0.2237136
[25,] 257.5 0.4474273
[26,] 292.5 0.4474273
[27,] 297.5 0.4474273
[28,] 302.5 0.6711409
[29,] 307.5 0.6711409
[30,] 312.5 0.2237136
[31,] 322.5 0.2237136
       [,1]      [,2]
 [1,]  92.5 0.2237136
 [2,] 102.5 0.4474273
 [3,] 107.5 0.6711409
 [4,] 112.5 0.4474273
 [5,] 117.5 0.0000000
 [6,] 132.5 0.4474273
 [7,] 137.5 0.2237136
 [8,] 182.5 0.2237136
 [9,] 187.5 1.5659955
[10,] 192.5 0.6711409
[11,] 197.5 0.2237136
[12,] 212.5 0.2237136
[13,] 217.5 0.8948546
[14,] 222.5 2.2371365
[15,] 227.5 1.7897092
[16,] 232.5 0.2237136
[17,] 237.5 1.1185682
[18,] 317.5 0.2237136
[19,] 447.5 0.4474273
      [,1]      [,2]
[1,] 107.5 0.2237136
[2,] 112.5 0.0000000
[1] "making cruise html"
[1] "2017-04-05 22:07:33 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"