[1] "2025-04-29 17:11:25 MDT" [1] "1211" "121028" "d302" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121028a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:11:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.79, ave o2scale2 = 0.803" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "615 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.79, ave o2scale2 = 0.803" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "615 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:11:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:11:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:11:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:11:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 615 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 753 row(s) with low FLSP" [1] "TEMP: 68 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:12:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.443 co2off = 365.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.02 minutes" [1] "Average Cal: 31.25 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 288.64 minutes" [1] "Removed 5 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.09905211 0.1046194 0.1025329 2 -15.57633 121.10400 2 4 10 17 0.10531484 0.1115778 0.1091420 2 54.05683 -32.33512 4 4 24 32 0.30780677 0.3133740 0.3112871 2 54.06007 -38.73554 5 2 33 39 0.31685524 0.5172980 0.4376772 2 -14.91204 115.18543 9 2 48 54 0.93545897 0.9396356 0.9382448 2 -16.37934 123.34440 10 4 55 61 0.94102668 0.9458982 0.9445075 2 54.72059 -39.06230 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.255395 1.234154 0.004484845 1.1128187 0.01485186 4.3889790 2 1.255129 1.233903 0.001292867 0.3455532 0.01034587 4.9722822 4 1.256765 1.235665 0.001533728 0.1144080 0.01337259 4.7682491 5 1.262726 1.241926 0.002368973 0.0451056 0.92490390 8.7395057 9 1.282042 1.262119 -0.015878977 2.6906782 0.02565127 4.2643521 10 1.282813 1.262951 0.002290652 0.1652858 0.00525067 0.4280473 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.253 co2l1 = 0.443 co2l0 = 0" [1] "co2l0 = -104.11 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "NO SAMPLE PERIODS" [1] "JGOFS data found" [1] "making html"