[1] "2025-04-29 17:10:59 MDT" [1] "1211" "121027" "d301" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121027a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85516 63 [1] 85516 [1] 85516 [1] "testing skipping spike filter" [1] 85516 [1] 85516 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:11:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.787, ave o2scale2 = 0.8" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "169 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.787, ave o2scale2 = 0.8" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "172 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:11:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:11:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:11:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:11:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 172 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 390 row(s) with low FLSP" [1] "TEMP: 862 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:11:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.441 co2off = 387.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.38 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 155 164 0.1343587 0.1406181 0.1381839 3 -16.68619 120.52783 4 4 165 171 0.1413137 0.1475765 0.1449338 3 53.83272 -38.57254 5 3 172 181 0.1482741 0.1545348 0.1534916 3 29.59407 29.73290 8 4 427 436 0.3430940 0.3493537 0.3469196 2 53.94330 -37.62695 9 2 437 446 0.3500491 0.3563116 0.3538776 2 -16.84574 121.86152 12 2 700 707 0.5532886 0.5581594 0.5564186 2 -16.33306 126.87637 13 4 708 717 0.5588552 0.5651166 0.5626805 2 53.90327 -37.94189 14 5 718 727 0.5658120 0.5720752 0.5710318 NA 20.67422 12.89920 17 4 845 853 0.8903090 0.8958728 0.8937863 2 53.97102 -39.57431 18 2 854 862 0.8965683 0.9021327 0.9000462 2 -15.85516 121.85665 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.279272 1.259123 0.0014862338 0.54356460 0.011781730 4.162385 4 1.278956 1.258816 0.0033745993 -0.02049849 0.013863754 1.859901 5 1.279056 1.258925 0.0031154360 -2.23357764 0.007960802 3.323869 8 1.276900 1.256720 0.0008438300 0.64826654 0.007093976 2.167945 9 1.276671 1.256468 -0.0043886939 0.90756467 0.011899760 3.999751 12 1.271342 1.250973 0.0043010167 1.15543968 0.009516515 2.950217 13 1.271091 1.250706 -0.0006247294 0.00401440 0.008034103 2.375597 14 1.270774 1.250371 -0.0026831399 2.67254023 0.001900349 3.701667 17 1.260320 1.239378 0.0038652108 -0.40541230 0.009397869 2.420346 18 1.260321 1.239413 -0.0083622571 0.61981037 0.025359906 1.898010 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.575 co2l1 = 0.441 co2l0 = 0.157" [1] "co2l0 = -103.89 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "16 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "64 out of 729 1-min values rejected as stack air" [1] "0 out of 658 Line 1 1-min values rejected as stack air" [1] "64 out of 71 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"