[1] "2025-04-29 17:08:55 MDT" [1] "1211" "121024" "d298" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121024a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:09:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.802" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "210 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.802" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "210 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:09:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:09:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:09:19 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:09:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 210 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1225 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:09:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.449 co2off = 367.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.48 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 3 12 0.003142361 0.009405093 0.006968009 2 51.96588 -38.25646 3 2 13 18 0.010100694 0.013577575 0.012534433 2 -17.48381 121.99470 6 2 265 273 0.211878472 0.217443113 0.215356494 3 -17.11604 119.20422 7 4 274 280 0.220920139 0.225096644 0.223705307 3 51.98281 -36.89978 8 3 281 290 0.225792043 0.232051244 0.231008044 3 28.29595 30.72680 11 4 517 523 0.420648177 0.426907841 0.424682286 2 52.06843 -38.89260 12 2 524 530 0.427603154 0.431776678 0.430385828 2 -17.17194 116.10637 13 5 531 540 0.434559028 0.440822078 0.439778964 NA 18.55928 15.45562 16 2 776 785 0.629382002 0.635644705 0.633210673 3 -16.96971 121.58067 17 4 786 795 0.636342824 0.642606916 0.640169416 3 52.09747 -37.24823 18 3 796 800 0.646779832 0.649564988 0.650260494 3 28.50287 34.61291 21 4 1013 1021 0.838128356 0.844387760 0.842003170 2 52.09582 -38.96385 22 2 1022 1027 0.845083333 0.848564034 0.847519198 2 -16.67731 120.52079 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.274807 1.254396 -2.782462e-05 -0.21144186 0.005559082 2.262442 3 1.274990 1.254580 -5.417256e-03 0.76475602 0.011982844 1.101665 6 1.273573 1.253071 6.344697e-03 0.21970269 0.014030228 1.163513 7 1.273472 1.252975 3.595012e-03 -1.39349411 0.008654388 4.170663 8 1.273343 1.252853 -2.338713e-03 0.51495106 0.010944194 1.928807 11 1.270662 1.250049 -3.788086e-03 0.03834748 0.014368143 2.866388 12 1.270559 1.249917 -9.492740e-03 0.46763112 0.016383764 2.077156 13 1.270184 1.249560 6.178747e-03 -2.38687946 0.004375223 3.472884 16 1.266737 1.245936 5.120046e-03 -0.33510209 0.013142885 3.663372 17 1.266391 1.245586 7.465376e-03 0.25739428 0.019738469 2.176748 18 1.265968 1.245147 5.267873e-03 2.95565683 0.005728561 3.017579 21 1.258631 1.237363 -1.007483e-03 0.04034420 0.012673304 3.750388 22 1.258566 1.237284 -2.698166e-02 -0.79218107 0.036608465 1.028551 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.003 co2l1 = 0.449 co2l0 = 0.139" [1] "co2l0 = -103.84 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "51 out of 275 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "224 out of 1059 1-min values rejected as stack air" [1] "145 out of 968 Line 1 1-min values rejected as stack air" [1] "79 out of 91 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"