[1] "2025-04-29 17:07:47 MDT" [1] "1211" "121022" "d296" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121022a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 79204 63 [1] 79204 [1] 79204 [1] "testing skipping spike filter" [1] 79204 [1] 79204 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:07:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.784" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "571 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.784" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "568 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:07:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:07:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:08:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:08:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 568 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 750 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:08:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.442 co2off = 397.49 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.01 minutes" [1] "Average Cal: 6.76 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 6 [4,] 7 7 [5,] 8 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 97 105 0.09586814 0.1014354 0.09934819 3 -19.14254 122.53519 4 4 106 113 0.10421748 0.1090863 0.10734697 3 51.39279 -36.27982 5 3 114 119 0.10978148 0.1160406 0.11638834 3 27.18327 37.08983 8 4 322 331 0.30461771 0.3108804 0.30844537 2 51.40773 -37.67830 9 2 332 338 0.31157587 0.3178380 0.31644741 2 -18.96346 121.39669 12 2 539 545 0.51546056 0.5199701 0.51844698 1 -18.52900 118.07934 17 3 613 618 0.74600799 0.7494850 0.75087617 1 27.61084 31.38715 20 2 713 717 0.93804745 0.9429190 0.94152690 1 -17.50702 120.88146 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.303063 1.284049 -0.0089250054 1.15445053 0.019783059 3.197492 4 1.303014 1.284047 -0.0011695364 2.80023087 0.002487992 5.568017 5 1.303040 1.284068 0.0010172373 9.12199603 0.005423803 6.460438 8 1.301165 1.282090 0.0026175237 -0.06704544 0.008736593 1.295112 9 1.301198 1.282154 -0.0125973043 0.45261307 0.022341316 1.748594 12 1.295000 1.275682 -0.0043820825 -1.01985167 0.010619024 2.802192 17 1.290081 1.270510 0.0006491218 2.46715151 0.001742917 6.989861 20 1.283339 1.263252 -0.0131401425 1.57554500 0.035154006 4.255524 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.554 co2l1 = 0.441 co2l0 = 0.169" [1] "co2l0 = -103.85 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "26 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "139 out of 636 1-min values rejected as stack air" [1] "97 out of 562 Line 1 1-min values rejected as stack air" [1] "42 out of 74 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"