[1] "2025-04-29 17:07:06 MDT" [1] "1211" "121021" "d295" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121021a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:07:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "436 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "436 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:07:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:07:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:07:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:07:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 436 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1000 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:07:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.442 co2off = 372.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.01 minutes" [1] "Average Cal: 7.23 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 49 54 0.05490521 0.05838226 0.05733924 2 50.74272 -37.73986 4 2 55 61 0.06116473 0.06533753 0.06394668 2 -19.06920 125.34524 7 2 252 258 0.26294444 0.26712092 0.26572863 3 -19.23025 119.06723 8 4 259 263 0.27129690 0.27407870 0.27338338 3 50.82821 -40.75475 10 3 270 275 0.28173261 0.28799537 0.28834355 3 26.77233 23.71651 13 4 443 449 0.47032567 0.47449867 0.47310761 2 50.95945 -38.26449 14 2 450 456 0.47728466 0.48146062 0.48006693 2 -18.88516 119.27598 17 2 664 670 0.67838220 0.68464583 0.68200242 3 -20.45073 119.79099 18 4 671 680 0.68534141 0.69160417 0.68916991 3 51.33609 -39.65237 19 3 681 686 0.69229974 0.69855911 0.69890689 3 27.06302 28.04239 22 4 883 891 0.88782772 0.89339236 0.89130580 2 51.24143 -39.36959 23 2 892 898 0.89617798 0.90035069 0.89895959 2 -18.83169 122.68295 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.305296 1.286307 0.006366748 0.5016307 0.008478604 1.392551 4 1.305296 1.286329 0.001722686 1.7277910 0.007393171 4.481895 7 1.304714 1.285688 -0.016772020 1.6672250 0.027468412 2.939116 8 1.304506 1.285445 -0.001622834 1.3046041 0.002173467 1.419520 10 1.304818 1.285734 0.012175059 -10.4703791 0.038465805 7.424036 13 1.303331 1.284290 -0.003918834 0.9858279 0.007898205 1.653107 14 1.303339 1.284348 -0.011640992 2.5403183 0.019188752 4.109663 17 1.302999 1.284026 0.041809132 0.2423785 0.131274710 1.058362 18 1.303235 1.284297 -0.002240123 0.7749870 0.012767798 2.903289 19 1.303316 1.284299 0.020516182 8.1114833 0.028483336 5.744766 22 1.303058 1.284032 0.006278720 -0.1627550 0.014484296 1.280501 23 1.303103 1.284118 -0.020886422 0.7039471 0.033468823 1.589777 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.84 co2l1 = 0.441 co2l0 = 0.13" [1] "co2l0 = -103.58 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "73 out of 370 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "297 out of 841 1-min values rejected as stack air" [1] "213 out of 741 Line 1 1-min values rejected as stack air" [1] "84 out of 100 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"