[1] "2025-04-29 17:06:27 MDT" [1] "1211" "121020" "d294" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121020a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84805 63 [1] 84805 [1] 84805 [1] "testing skipping spike filter" [1] 84805 [1] 84805 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:06:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "514 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "513 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:06:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:06:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:06:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:06:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 513 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 899 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:07:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.449 co2off = 392.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.88 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 8 14 0.01113310 0.01530556 0.01391464 3 -18.87696 119.46021 3 4 15 20 0.01878643 0.02226389 0.02122051 3 49.73575 -38.45966 5 3 26 31 0.02991733 0.03618018 0.03652782 3 26.19448 31.25113 8 4 202 207 0.21776736 0.22403009 0.22229049 2 49.94145 -40.08800 9 2 208 214 0.22472561 0.23099583 0.22918415 2 -18.84550 113.28055 12 2 392 398 0.42612471 0.43238432 0.43015856 2 -19.08524 113.68092 13 4 399 404 0.43308018 0.43933981 0.43760106 2 50.09652 -42.44206 17 4 580 585 0.63485451 0.64111771 0.63868087 2 50.23756 -40.63843 18 2 586 592 0.64181331 0.64807216 0.64584671 2 -19.01933 112.15589 22 2 757 763 0.84337847 0.84964198 0.84699642 3 -18.93289 121.37236 23 4 764 770 0.85033733 0.85660000 0.85395589 3 50.44107 -37.81651 24 3 771 775 0.85729543 0.86007755 0.86309336 3 26.62196 30.28937 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.293838 1.273866 0.002765029 0.6993363 0.004943549 1.729998 3 1.293773 1.273779 0.002171452 -0.8842664 0.003070356 2.229576 5 1.293841 1.273859 0.005460646 15.0904674 0.007101638 10.683465 8 1.295808 1.276025 -0.002650225 -0.3738750 0.009226515 2.102843 9 1.296033 1.276221 -0.005458575 1.3362624 0.017996826 3.871648 12 1.298037 1.278322 -0.005625228 0.2267574 0.018154661 1.638767 13 1.298268 1.278610 0.011517391 1.0448591 0.036232696 3.813686 17 1.299437 1.279736 0.001216997 1.1194796 0.005083163 4.001006 18 1.299668 1.279994 -0.005171005 2.0693203 0.019056639 7.530644 22 1.303053 1.283936 -0.002907318 1.3113828 0.015892153 4.244973 23 1.303041 1.283965 0.004007578 -0.5117701 0.018447797 2.047721 24 1.303189 1.284099 0.008860278 2.2953801 0.009071188 8.710139 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.856 co2l1 = 0.449 co2l0 = 0.171" [1] "co2l0 = -103.26 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 304 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "208 out of 739 1-min values rejected as stack air" [1] "163 out of 662 Line 1 1-min values rejected as stack air" [1] "45 out of 77 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"