[1] "2025-04-29 17:05:50 MDT" [1] "1211" "121019" "d293" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121019a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:05:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.792" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "443 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.792" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "443 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:05:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:05:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:06:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:06:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 443 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 992 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:06:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.457 co2off = 388.32 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.66 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 180 186 0.1738796 0.1801388 0.1774960 3 -18.49746 117.97986 4 4 187 192 0.1808341 0.1843115 0.1832685 3 48.92650 -35.78944 5 3 193 198 0.1877918 0.1912695 0.1930098 3 25.86291 28.33077 8 4 371 377 0.3826065 0.3888693 0.3870584 2 49.05997 -37.56329 9 2 378 383 0.3895648 0.3958310 0.3947873 2 -18.31753 119.10129 13 2 586 595 0.5914132 0.5976761 0.5952410 3 -20.38285 122.71673 14 4 596 602 0.5983716 0.6046343 0.6028256 3 49.39527 -40.67616 15 3 603 610 0.6053299 0.6102019 0.6098543 3 25.73286 27.99332 18 4 803 808 0.8001582 0.8064186 0.8046790 2 49.40175 -36.71353 19 2 809 813 0.8071166 0.8098984 0.8092030 2 -18.96260 112.27547 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.276916 1.255730 -0.0135227474 0.5673568 0.042632522 2.614276 4 1.276920 1.255790 0.0188623268 1.1847835 0.025701461 2.195983 5 1.277257 1.256154 0.0151385212 2.9050235 0.019752011 10.295202 8 1.279594 1.258627 -0.0002735498 1.7459794 0.001554472 4.735440 9 1.279775 1.258806 -0.0180245548 0.8331873 0.024876230 1.467796 13 1.283372 1.262818 0.0139481252 1.6986565 0.034915762 5.213945 14 1.283796 1.263253 0.0125361711 0.3944208 0.035062307 2.529890 15 1.284212 1.263683 0.0252571341 3.9539129 0.047773152 2.798984 18 1.289091 1.268815 -0.0009186924 0.4066445 0.003130412 1.287664 19 1.289177 1.268857 -0.0210964985 0.9568132 0.022504542 0.958574 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.987 co2l1 = 0.455 co2l0 = 0.12" [1] "co2l0 = -103.65 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "126 out of 265 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "139 out of 860 1-min values rejected as stack air" [1] "103 out of 768 Line 1 1-min values rejected as stack air" [1] "36 out of 92 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"