[1] "2025-04-29 17:05:30 MDT" [1] "1211" "121018" "d292" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121018a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74978 63 [1] 74978 [1] 74978 [1] "testing skipping spike filter" [1] 74978 [1] 74978 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:05:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.787" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "486 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.787" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "483 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:05:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:05:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:05:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:05:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 483 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 763 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:05:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.453 co2off = 372.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.38 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 117 122 0.1247381 0.1310008 0.1299562 2 -15.59287 94.859212 4 4 123 129 0.1316961 0.1379550 0.1365643 2 53.04446 -63.995782 8 4 300 306 0.3334630 0.3397269 0.3374995 2 53.27942 -66.745073 9 2 307 312 0.3404224 0.3466849 0.3449440 2 -15.38578 95.448953 12 2 490 496 0.5422824 0.5485493 0.5471552 3 -15.31320 94.620806 13 4 497 503 0.5492444 0.5555078 0.5541150 3 53.33310 -64.046654 15 3 509 514 0.5659487 0.5694365 0.5711812 3 29.88494 5.647177 19 2 735 741 0.9741688 0.9783450 0.9769533 1 -18.78692 120.142667 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.296359 1.276510 -0.0108165688 1.8694062 0.014600585 2.4680095 4 1.296089 1.276251 0.0120367635 0.1477593 0.020335145 1.3989314 8 1.295612 1.275910 -0.0006858988 1.1791992 0.002376066 3.8555420 9 1.295559 1.275825 0.0044179262 0.5896143 0.014389893 3.2607950 12 1.291712 1.271819 0.0046052559 0.2316150 0.009610379 1.1655859 13 1.291481 1.271632 0.0090720129 -0.4845021 0.022334835 1.8032554 15 1.291163 1.271263 0.0090703019 0.1928482 0.011878179 0.6851622 19 1.277861 1.256641 0.0166968795 0.3894499 0.026674338 1.1350357 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.684 co2l1 = 0.452 co2l0 = 0.11" [1] "co2l0 = -99.38 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "67 out of 350 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "283 out of 651 1-min values rejected as stack air" [1] "243 out of 581 Line 1 1-min values rejected as stack air" [1] "40 out of 70 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"