[1] "2025-04-29 17:04:48 MDT" [1] "1211" "121017" "d291" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121017a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:04:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "502 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "501 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:04:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:04:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:05:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:05:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 501 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 931 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:05:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.452 co2off = 376.11 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.02 minutes" [1] "Average Cal: 6.16 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 88 93 0.08129630 0.08755929 0.08651633 2 52.27495 -64.925914 4 2 94 99 0.08825472 0.09173611 0.09069138 2 -15.94139 95.789334 7 2 297 302 0.29029826 0.29377969 0.29273521 3 -16.08205 92.832251 8 4 303 309 0.29726678 0.30144580 0.30005261 3 52.55189 -66.089513 10 3 318 325 0.31190741 0.31678845 0.31643867 3 29.03058 3.655098 13 4 491 496 0.49891525 0.50239823 0.50135334 2 52.66697 -54.531609 14 2 497 501 0.50588553 0.50867187 0.50797556 2 -16.20210 94.644044 17 2 671 676 0.70735174 0.71083718 0.70979159 3 -15.88408 96.444948 18 4 677 683 0.71432407 0.72059349 0.71794666 3 52.77073 -64.674373 19 3 684 689 0.72129172 0.72756785 0.72791594 3 29.25341 9.924007 22 4 853 858 0.91585333 0.91934343 0.91829575 2 52.91273 -66.981480 23 2 859 864 0.92282723 0.92630865 0.92526416 2 -16.05966 93.565515 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.281751 1.261023 0.002215942 -1.45239426 0.003427590 2.8804458 4 1.281878 1.261180 -0.008379825 4.57694726 0.013580621 6.6446632 7 1.287484 1.267059 -0.004033153 2.18003205 0.005389847 2.8576339 8 1.287696 1.267269 0.007545675 -0.31636155 0.016544885 0.8781488 10 1.288248 1.267892 0.008237808 -1.50799447 0.015870160 1.0741772 13 1.292910 1.272751 0.009932427 3.51439518 0.014143747 4.6048297 14 1.293325 1.273165 -0.019384705 5.56610784 0.020968944 5.8476462 17 1.295739 1.275801 0.015657598 -0.01626673 0.020941410 2.4882405 18 1.295539 1.275611 0.005419860 0.06207356 0.021856829 0.6193485 19 1.295503 1.275547 0.004286162 2.85721671 0.015962644 2.0254082 22 1.295827 1.275923 0.005794745 -0.79097431 0.008247534 1.0635165 23 1.295787 1.275901 0.001870100 0.32617394 0.010170999 0.6961629 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.582 co2l1 = 0.452 co2l0 = 0.138" [1] "co2l0 = -98.17 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "50 out of 780 1-min values rejected as stack air" [1] "3 out of 699 Line 1 1-min values rejected as stack air" [1] "47 out of 81 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"