[1] "2025-04-29 17:04:13 MDT" [1] "1211" "121016" "d290" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121016a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:04:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.795" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "381 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.795" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "381 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:04:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:04:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:04:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:04:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 381 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 18 row(s) with low FLSP" [1] "TEMP: 1037 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:04:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.456 co2off = 381.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.01 minutes" [1] "Average Cal: 6.21 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 36 40 0.04100579 0.04378764 0.04309229 3 -16.99904 100.8413308 4 4 41 46 0.04726505 0.05074291 0.04969935 3 52.11492 -65.2833305 6 3 53 57 0.06048267 0.06326450 0.06581695 3 28.45088 0.8408215 8 4 206 210 0.24696296 0.24974433 0.24904901 2 51.95837 -63.7042187 9 2 211 217 0.25322222 0.25809031 0.25628231 2 -16.29228 97.7131151 12 2 424 429 0.45783368 0.46131256 0.46026825 3 -15.72175 97.6826619 13 4 430 435 0.46201053 0.46827361 0.46583775 3 51.83225 -66.3254112 14 3 436 443 0.46897214 0.47384421 0.47349651 3 28.68504 6.4677589 17 4 655 664 0.66382248 0.67008545 0.66764839 2 51.88513 -65.2264139 18 2 665 671 0.67286693 0.67703990 0.67564907 2 -15.88455 92.8071262 22 2 894 901 0.87395246 0.87882870 0.87708850 3 -16.11990 94.7388007 23 4 902 907 0.87952413 0.88300579 0.88196144 3 52.09800 -59.9853292 24 3 908 917 0.88648472 0.89274939 0.89170344 3 28.75398 8.9223081 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.297761 1.277696 0.0335497820 -4.48008857 0.034041469 4.938364 4 1.297041 1.276967 -0.0063193841 0.09723057 0.008610098 1.228985 6 1.296122 1.276019 0.0151994646 2.82197208 0.015429907 9.209299 8 1.283534 1.262841 -0.0085516518 2.70876971 0.008715109 2.712723 9 1.282795 1.262038 -0.0042041017 2.93334420 0.010391179 7.003480 12 1.272865 1.251619 0.0019329198 2.33759773 0.002744787 3.283503 13 1.272507 1.251245 0.0037173874 0.82018124 0.019269741 3.138795 14 1.272247 1.250962 0.0004693936 -1.77511711 0.006547383 1.256923 17 1.267658 1.246157 0.0059504928 0.80294036 0.021325522 4.005843 18 1.267995 1.246418 -0.0065281017 -1.89371053 0.010800246 3.234640 22 1.276786 1.255711 -0.0041332243 0.48334491 0.009832556 1.023540 23 1.276845 1.255800 0.0185723055 2.61828599 0.025552489 3.521617 24 1.277219 1.256182 0.0041156378 1.16298916 0.013537107 1.532241 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.721 co2l1 = 0.455 co2l0 = 0.138" [1] "co2l0 = -98.11 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 409 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "324 out of 869 1-min values rejected as stack air" [1] "251 out of 786 Line 1 1-min values rejected as stack air" [1] "73 out of 83 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"