[1] "2025-04-29 17:03:33 MDT" [1] "1211" "121015" "d289" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121015a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:03:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "572 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "570 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:03:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:03:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:03:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:03:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 570 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 20 row(s) with low FLSP" [1] "TEMP: 846 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:04:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.451 co2off = 397.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.01 minutes" [1] "Average Cal: 4.84 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 2 [3,] 3 4 [4,] 5 7 [5,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 4 0.004799769 0.006890046 0.006542245 1 -16.68244 96.62306 6 3 185 188 0.217010446 0.221882002 0.230230078 1 28.09606 11.06228 8 4 317 323 0.411893374 0.416069965 0.414679010 2 51.61010 -66.75236 9 2 324 330 0.419550984 0.423724363 0.422333293 2 -16.76309 92.45396 13 2 501 507 0.619987587 0.626250434 0.624857228 3 -17.42559 96.05069 14 4 508 512 0.630423437 0.633204948 0.632509568 3 51.92573 -56.40601 15 3 513 517 0.637378472 0.640163079 0.642713696 3 28.19456 10.26393 18 4 688 693 0.829446007 0.832927083 0.831883847 2 52.13402 -62.41028 19 2 694 700 0.835717593 0.839905642 0.838502355 2 -17.64096 95.35698 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.276028 1.254322 -0.014600666 5.4406241 0.010341437 3.8535140 6 1.279084 1.257668 0.013106978 1.3194043 0.009280777 10.6327873 8 1.288000 1.267101 -0.003950429 -0.8402414 0.009191814 4.3128568 9 1.288657 1.267784 -0.014002559 -1.6900212 0.023736493 3.3769040 13 1.298712 1.278414 0.007447276 -0.4880153 0.018904917 1.7614848 14 1.298880 1.278670 -0.005367642 0.6211562 0.005395431 0.9854431 15 1.299118 1.278888 0.002148851 1.4513049 0.002162355 4.9907877 18 1.302937 1.283004 0.006359314 2.3719473 0.009048247 3.6540573 19 1.303044 1.283133 -0.007763965 0.8517323 0.018871771 1.5497493 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.067 co2l1 = 0.451 co2l0 = 0.14" [1] "co2l0 = -98.5 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "17 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "38 out of 727 1-min values rejected as stack air" [1] "0 out of 689 Line 1 1-min values rejected as stack air" [1] "38 out of 38 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"