[1] "2025-04-29 17:02:59 MDT" [1] "1211" "121014" "d288" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121014a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86132 63 [1] 86132 [1] 86132 [1] "testing skipping spike filter" [1] 86132 [1] 86132 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:03:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "539 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.794" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "541 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:03:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:03:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:03:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:03:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 541 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 399 row(s) with low FLSP" [1] "TEMP: 494 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:03:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.454 co2off = 381.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.01 minutes" [1] "Average Cal: 6.23 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 7 [4,] 8 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 4 10 0.1659217 0.1714897 0.1695421 1 -17.37221 94.303830 5 4 75 80 0.5789594 0.5824373 0.5813940 2 51.07814 -60.248313 6 2 81 86 0.5831358 0.5893987 0.5876601 2 -17.05295 89.886484 9 2 281 287 0.7849252 0.7911843 0.7897936 3 -16.95574 95.198565 10 4 288 293 0.7918843 0.7953619 0.7943187 3 51.11308 -60.659478 11 5 294 303 0.7988391 0.8050987 0.8040557 NA 19.01378 -5.512751 12 3 304 309 0.8085763 0.8120569 0.8124046 3 27.92794 3.767503 15 4 490 494 0.9936679 0.9964501 0.9957546 1 51.21685 -61.819063 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.286751 1.265148 -0.0013050288 0.7802031 0.006778384 2.284208 5 1.281481 1.259956 -0.0068701906 0.5383416 0.009357814 1.430028 6 1.281168 1.259648 -0.0124584064 0.3350778 0.039968652 4.041501 9 1.278132 1.256541 0.0003173744 1.0913037 0.007860432 1.809785 10 1.277706 1.256141 0.0180171018 1.8909776 0.024040838 3.926494 11 1.277579 1.255974 0.0845782531 1.2096330 0.059883106 2.389154 12 1.277375 1.255755 0.0150341817 15.2283199 0.020150282 10.782406 15 1.275765 1.254073 0.0042435233 -1.1090684 0.004962490 1.214338 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.086 co2l1 = 0.456 co2l0 = 0.112" [1] "co2l0 = -98.41 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "26 out of 97 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "71 out of 412 1-min values rejected as stack air" [1] "19 out of 360 Line 1 1-min values rejected as stack air" [1] "52 out of 52 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"