[1] "2025-04-29 17:02:45 MDT" [1] "1211" "121013" "d287" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121013a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 47334 63 [1] 47334 [1] 47334 [1] "testing skipping spike filter" [1] 47334 [1] 47334 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:02:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.793" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "283 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.793" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "280 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:02:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:02:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:02:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:02:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 280 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 397 row(s) with low FLSP" [1] "TEMP: 109 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:02:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.3" [1] "Nominal linear calibrations:" [1] "co2scl = 0.452 co2off = 397.61 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 120.24 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 297.59 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 63 70 0.06721065 0.0720787 0.07033992 1 -18.42770 101.2659608 5 4 71 78 0.55220139 0.7463528 0.74414792 2 50.93989 -63.5064045 6 2 79 94 0.74982986 0.9564896 0.88188614 2 -17.42135 97.0382471 7 4 95 100 0.95718521 0.9634484 0.96170885 2 51.09352 -62.9259560 8 3 101 109 0.96414363 0.9697108 0.96901547 2 27.59471 -0.4566716 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.294133 1.275136 0.0005121827 0.12739778 0.008745929 4.3737226 5 1.281258 1.258884 -0.0039123327 0.12448618 0.014022955 0.6793285 6 1.284752 1.262666 -0.0014875482 -0.00824293 0.217886961 3.8057389 7 1.286755 1.264868 0.0070534019 -0.61745318 0.022351091 1.9473099 8 1.286964 1.265057 0.0079667163 2.37077939 0.019711984 2.5109380 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.561 co2l1 = 0.449 co2l0 = 0" [1] "co2l0 = -98.03 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "2 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "23 out of 56 1-min values rejected as stack air" [1] "21 out of 26 Line 1 1-min values rejected as stack air" [1] "2 out of 30 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"