[1] "2025-04-29 17:02:04 MDT" [1] "1211" "121012" "d286" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121012a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:02:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "119 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.775" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "117 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:02:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:02:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:02:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:02:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 117 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 17 row(s) with low FLSP" [1] "TEMP: 1298 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:02:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.438 co2off = 374.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.58 minutes" [1] "Shortest Cal: 7.04 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 10 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 31 40 0.02251748 0.02880394 0.02635898 2 50.72532 -62.623367 4 2 41 50 0.02950327 0.03578203 0.03334220 2 -20.98996 88.929991 5 5 51 60 0.03647801 0.04273678 0.04169366 NA 12.56128 -19.456989 9 2 331 340 0.23132604 0.23759178 0.23515646 3 -20.52452 94.438916 10 4 341 350 0.23828712 0.24456829 0.24211780 3 50.84587 -63.897884 11 3 351 360 0.24526374 0.25152642 0.25048230 3 26.32880 -1.296888 15 4 616 625 0.43993458 0.44621950 0.44377377 2 50.95766 -62.649898 16 2 626 635 0.44691756 0.45319546 0.45075441 2 -20.00058 96.643387 20 2 888 895 0.64854858 0.65343987 0.65169554 2 -19.63848 94.532932 21 4 896 904 0.65623394 0.66181149 0.65972007 2 50.95998 -61.310266 22 5 905 914 0.66251276 0.66879054 0.66774469 NA 13.39128 -15.018357 26 4 1127 1135 0.85728241 0.86287526 0.86077312 2 51.02927 -62.665433 27 2 1136 1143 0.86567370 0.87056085 0.86881485 2 -19.43977 96.985810 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.312341 1.294468 -0.0009654625 0.3951787 0.003317203 1.737116 4 1.312511 1.294648 0.0066835458 3.4160266 0.019624629 8.565127 5 1.312406 1.294532 0.1507302459 2.0231747 0.106728930 2.723338 9 1.311981 1.293967 -0.0033533369 1.9572788 0.012205456 6.193562 10 1.311792 1.293785 0.0046627510 -0.3251033 0.015573379 1.836769 11 1.311721 1.293697 0.0198783364 3.2818861 0.052124783 4.344508 15 1.310217 1.292076 -0.0057888929 -0.7557997 0.014731488 3.688640 16 1.310231 1.292084 -0.0027461550 1.4088024 0.014887853 4.128313 20 1.307744 1.289437 -0.0046704585 0.3459839 0.009860960 2.969230 21 1.307391 1.289064 0.0079017492 -0.2396235 0.018102490 1.889288 22 1.307344 1.289024 0.1581471639 -1.7102415 0.112209007 2.308546 26 1.304327 1.285879 0.0024032554 0.7656252 0.005710315 3.342956 27 1.304307 1.285868 -0.0070677495 3.0681550 0.015197947 5.905074 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.111 co2l1 = 0.437 co2l0 = 0.183" [1] "co2l0 = -98.09 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "112 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "168 out of 1094 1-min values rejected as stack air" [1] "34 out of 910 Line 1 1-min values rejected as stack air" [1] "134 out of 184 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"