[1] "2025-04-29 17:01:49 MDT" [1] "1211" "121011" "d285" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121011a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 52140 63 [1] 52140 [1] 52140 [1] "testing skipping spike filter" [1] 52140 [1] 52140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:01:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 2 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "157 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 2 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "154 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:01:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:01:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:01:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:01:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 154 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 706 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:02:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.3 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.434 co2off = 395.99 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 4 160 166 0.6049328 0.6111969 0.6098038 1 50.15105 -60.69920 9 2 439 448 0.8136956 0.8199670 0.8175261 3 -21.08080 82.80212 10 4 449 458 0.8206632 0.8269363 0.8244932 3 50.54332 -64.62281 11 3 459 468 0.8276319 0.8339126 0.8328671 3 25.76369 -30.30016 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.310210 1.292443 0.009081207 1.295367 0.02027956 3.011507 9 1.309111 1.291105 0.007104282 3.690807 0.01917014 10.793400 10 1.309143 1.291134 0.008007302 1.246254 0.02423574 4.450221 11 1.309109 1.291109 0.049651708 12.339951 0.12579281 16.115419 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.551 co2l1 = 0.434 co2l0 = 0.232" [1] "co2l0 = -94.34 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "94 out of 247 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "153 out of 632 1-min values rejected as stack air" [1] "73 out of 518 Line 1 1-min values rejected as stack air" [1] "80 out of 114 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"