[1] "2025-04-29 16:59:05 MDT" [1] "1210" "121001" "d275" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/121001a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:59:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "67 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.786" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:59:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:59:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:59:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:59:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 745 row(s) with low FLSP" [1] "TEMP: 622 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:59:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.446 co2off = 383.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 34.53 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 299.59 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 4 192 199 0.1409374 0.1458091 0.1440688 2 47.88892 -37.21727 5 2 200 208 0.1472002 0.1527674 0.1506798 2 -22.04223 120.70112 9 2 470 478 0.3496746 0.3552419 0.3531551 3 -21.60187 121.67248 10 4 479 488 0.3559373 0.3621965 0.3597622 3 47.76250 -39.12699 11 3 489 496 0.3628919 0.3684558 0.3681081 3 24.00713 24.56104 13 4 560 568 0.5584249 0.5640182 0.5619316 2 47.76975 -40.74529 14 2 569 586 0.5647137 0.7727604 0.6816965 2 -21.64950 119.74219 15 4 587 595 0.7734560 0.7790231 0.7769368 2 47.90823 -37.89639 16 3 596 604 0.7804143 0.7859780 0.7852826 2 24.07985 26.43209 17 4 605 613 0.9759256 0.9814931 0.9794067 2 47.99459 -41.90804 18 2 614 622 0.9821887 0.9877558 0.9856681 2 -22.00439 119.29259 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.302112 1.283962 -0.0026342952 0.416976808 0.006560019 1.473603 5 1.301331 1.283172 0.0026240120 0.525124808 0.008187398 1.992299 9 1.291833 1.273067 -0.0024866198 1.649639631 0.006028300 4.610909 10 1.291509 1.272757 0.0072938257 -0.282774152 0.021065030 2.766579 11 1.291514 1.272741 0.0092530928 -3.262697338 0.022727349 2.310344 13 1.285873 1.266800 -0.0061577515 -1.018675873 0.014533143 3.103568 14 1.285471 1.266387 -0.0003783398 -0.007733829 0.058585637 4.863212 15 1.285394 1.266297 0.0086731545 1.491796208 0.019350513 3.670995 16 1.285554 1.266473 0.0078415240 3.231423822 0.017816442 3.315410 17 1.287026 1.268104 0.0026171582 -0.364835367 0.009227087 1.136601 18 1.287261 1.268348 0.0018185270 2.752674341 0.011130717 6.133169 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.13 co2l1 = 0.443 co2l0 = 0.171" [1] "co2l0 = -103.41 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 125 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "104 out of 490 1-min values rejected as stack air" [1] "15 out of 399 Line 1 1-min values rejected as stack air" [1] "89 out of 91 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"