[1] "2025-04-29 16:58:20 MDT" [1] "1210" "120930" "d274" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120930a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:58:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "70 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "72 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:58:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:58:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:58:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:58:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 72 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 14 row(s) with low FLSP" [1] "TEMP: 1348 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:59:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.437 co2off = 379.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 8.03 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 114 120 0.09751149 0.1016845 0.1002937 3 -22.667087 118.985213 5 4 121 129 0.10377086 0.1093383 0.1072520 3 47.655500 -36.501852 6 3 130 138 0.11073267 0.1162983 0.1156017 3 23.558920 31.257812 10 4 384 393 0.30555269 0.3118156 0.3093788 2 47.835023 -39.332919 11 2 394 402 0.31251097 0.3180773 0.3159886 2 -22.884705 118.952111 12 5 403 410 0.32016438 0.3257280 0.3253803 NA 8.458688 8.561153 16 2 673 681 0.51464815 0.5202278 0.5181352 3 -23.374866 122.089589 17 4 682 691 0.52092575 0.5272068 0.5247623 3 47.939852 -33.639596 18 3 692 700 0.52790480 0.5334846 0.5327871 3 23.512170 29.377651 22 4 966 974 0.72337963 0.7289606 0.7268676 2 47.958402 -34.629771 23 2 975 983 0.72965856 0.7352411 0.7331491 2 -23.253670 121.650952 27 2 1260 1268 0.93202190 0.9376007 0.9355083 2 -23.084545 122.148474 28 4 1269 1277 0.93829861 0.9438788 0.9417856 2 47.921634 -40.552162 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.311063 1.293206 -0.017082217 -1.76377390 0.027141829 6.515903 5 1.311687 1.293842 0.002944850 -0.19013282 0.015373094 2.930669 6 1.311987 1.294144 0.005428741 5.97403732 0.012528131 6.110321 10 1.317562 1.299991 0.005759700 0.54069867 0.016117417 1.523003 11 1.317802 1.300211 -0.013477541 0.96427164 0.035144970 2.803021 12 1.317614 1.300076 -0.020089843 3.91478549 0.014230524 2.772439 16 1.321060 1.303443 -0.004769318 0.99926855 0.013068252 2.601840 17 1.320847 1.303295 0.003557863 -0.09389775 0.013319014 2.101880 18 1.320801 1.303292 0.004345259 2.76667453 0.010827646 3.136342 22 1.318620 1.301126 -0.001417355 1.09808391 0.005522782 2.804177 23 1.318506 1.300994 -0.006372595 2.73990843 0.015296876 6.445717 27 1.313115 1.295407 -0.006320886 0.02930268 0.014161812 1.792503 28 1.312596 1.294877 0.005227546 0.34457475 0.016621923 1.837491 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.423 co2l1 = 0.438 co2l0 = 0.178" [1] "co2l0 = -103.99 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "68 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "212 out of 1136 1-min values rejected as stack air" [1] "39 out of 913 Line 1 1-min values rejected as stack air" [1] "173 out of 223 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"