[1] "2017-04-05 21:47:22 MDT"
[1] "1210"   "120930" "d274"  
[1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/120930a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2017-04-05 21:47:33 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.77"
[1] "70 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.77"
[1] "72 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2017-04-05 21:47:35 MDT"
[1] "Plotting 1-second data"
[1] "2017-04-05 21:47:35 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-05 21:47:58 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2017-04-05 21:48:01 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 72 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "Removed 14 row(s) with low FLSP"
[1] "TEMP: 1348 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-05 21:48:09 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -455.1"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -549.7"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -633.6"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.88 O2 = -579"
[1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.24 O2 = -589.1"
[1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.11 O2 = -557.7"
[1] "Nominal linear calibrations:"
[1] "co2scl = 0.437  co2off = 379.22 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 8.03 minutes"
[1] "Average Cal: 8.03 minutes"
[1] "Shortest Cal: 6.01 minutes"
[1] "Longest Cal: 9.04 minutes"
[1] "Removed 1 calibration row(s) with high SD"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      3
[2,]        4      5
[3,]        7      9
[4,]       10     11
[5,]       12     13
[1] "calperiods$grp"
 [1]  3  3  3  2  2 NA  3  3  3  2  2  2  2
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 384.249  co2l1 = 0.437 co2l0 = 0.176"
[1] "co2l0 = -105.09  co2l1 = 0.228"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "68 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "212 out of 1136 1-min values rejected as stack air"
[1] "39 out of 913 Line 1 1-min values rejected as stack air"
[1] "173 out of 223 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "making html"