[1] "2025-04-29 16:57:47 MDT" [1] "1210" "120929" "d273" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120929a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84895 63 [1] 84895 [1] 84895 [1] "testing skipping spike filter" [1] 84895 [1] 84895 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:57:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "65 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "65 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:57:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:57:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:58:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:58:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 65 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1347 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:58:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.435 co2off = 369.29 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 8 [4,] 9 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 100 109 0.07111551 0.07737847 0.07494322 2 -24.448664 119.20215 5 4 110 119 0.07807402 0.08433681 0.08190249 2 47.537758 -37.68663 6 5 120 129 0.08503232 0.09129499 0.09025171 NA 7.472219 14.10004 10 4 394 403 0.27985885 0.28611808 0.28368422 2 47.523359 -40.30735 11 2 404 413 0.28681374 0.29307639 0.29064240 2 -24.080148 120.91952 15 2 691 700 0.48857986 0.49484259 0.49240523 3 -23.981266 119.23923 16 4 701 710 0.49553819 0.50179745 0.49936321 3 47.394719 -36.72994 17 3 711 719 0.50249647 0.50805998 0.50736453 3 22.945312 23.51627 20 4 937 944 0.69393310 0.69880402 0.69706331 1 47.435844 -35.42070 25 4 1207 1215 0.88876027 0.89432755 0.89223936 2 47.447491 -35.45793 26 2 1216 1224 0.89502315 0.90059031 0.89850253 2 -22.544902 119.82973 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.320130 1.302851 -0.0099256574 0.002802957 0.024616930 4.717796 5 1.320142 1.302836 0.0066680279 0.483109671 0.018486736 2.387007 6 1.320054 1.302795 0.0444976077 1.340534008 0.031510446 1.881511 10 1.315886 1.298388 -0.0049720411 0.160406238 0.012688786 2.154598 11 1.315756 1.298266 -0.0051676836 0.528393343 0.013503056 3.006915 15 1.309402 1.291581 0.0073423696 0.266027892 0.019375540 1.579040 16 1.309195 1.291356 0.0029672813 0.363633949 0.016772173 2.956408 17 1.309060 1.291212 0.0107670708 4.546541379 0.023948839 5.312234 20 1.302929 1.284736 0.0057402360 1.107194830 0.011113952 4.120628 25 1.300816 1.282506 -0.0003575871 0.101213883 0.004354031 1.331807 26 1.301057 1.282736 -0.0179155443 0.665076880 0.040692778 2.226334 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.636 co2l1 = 0.436 co2l0 = 0.184" [1] "co2l0 = -103.78 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "38 out of 255 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "217 out of 1153 1-min values rejected as stack air" [1] "17 out of 953 Line 1 1-min values rejected as stack air" [1] "200 out of 200 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"