[1] "2025-04-29 16:57:02 MDT" [1] "1210" "120928" "d272" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120928a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:57:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.765" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:57:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:57:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:57:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:57:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1366 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:57:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.433 co2off = 380 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.63 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 34 43 0.02734838 0.03361204 0.03117641 2 47.319414 -35.82819 4 2 44 53 0.03430732 0.04057057 0.03813538 2 -23.935562 120.01119 8 2 307 312 0.23610382 0.23958102 0.23853768 3 -24.159516 117.44202 9 4 313 322 0.24305903 0.24932179 0.24688465 3 47.466109 -36.12672 10 3 323 332 0.25001736 0.25628009 0.25523609 3 22.870570 29.67639 14 4 579 588 0.44484149 0.45110188 0.44866683 2 47.535578 -38.81941 15 2 589 598 0.45179980 0.45806256 0.45562589 2 -24.290563 119.54891 16 5 599 608 0.45875810 0.46501736 0.46397399 NA 7.642344 14.02465 20 2 870 879 0.65363657 0.65989942 0.65746543 3 -24.222930 122.14682 21 4 880 889 0.66059491 0.66685767 0.66442332 3 47.489805 -36.67434 22 3 890 899 0.66755324 0.67381354 0.67276984 3 22.860672 29.88197 26 4 1170 1178 0.86307176 0.86864005 0.86655291 2 47.626214 -38.34389 27 2 1179 1188 0.86933562 0.87559835 0.87316233 2 -24.390148 115.93060 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.322338 1.305197 -0.0008008006 0.64783052 0.009342798 1.8086811 4 1.322275 1.305144 -0.0144651001 1.60108084 0.036211556 4.2043017 8 1.324765 1.307826 0.0103149942 0.39684013 0.013684634 0.5884977 9 1.324843 1.307874 0.0084679030 0.56729900 0.024061764 2.2066399 10 1.324873 1.307867 0.0049150375 0.48850168 0.014898595 1.9115880 14 1.325630 1.308691 0.0007952160 -0.06309492 0.007488812 2.2258078 15 1.325631 1.308681 -0.0126465600 1.29695683 0.032593838 4.7762022 16 1.325326 1.308385 0.0569675541 -0.28851660 0.040349281 0.5508505 20 1.323431 1.306522 -0.0077798776 0.89196158 0.019950621 3.6276074 21 1.323136 1.306173 0.0043593177 -1.01713153 0.016918840 4.7088164 22 1.323126 1.306113 0.0090933745 4.67031777 0.023307790 6.3064417 26 1.323068 1.305850 -0.0003013749 -0.38241501 0.004818024 2.9342522 27 1.322744 1.305508 -0.0059434820 -0.65909566 0.015975216 4.7142057 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.814 co2l1 = 0.433 co2l0 = 0.2" [1] "co2l0 = -103.87 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 300 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "234 out of 1171 1-min values rejected as stack air" [1] "81 out of 961 Line 1 1-min values rejected as stack air" [1] "153 out of 210 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"