[1] "2025-04-29 16:56:15 MDT" [1] "1210" "120927" "d271" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120927a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:56:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "228 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.76, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "227 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:56:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:56:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:56:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:56:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 227 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1208 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:56:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.44 co2off = 398.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.69 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 7 [5,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 4 0.001375058 0.003461487 0.004504579 1 22.52691 35.19645 5 4 235 240 0.192013889 0.198273032 0.197229731 2 46.80022 -37.42919 6 2 241 250 0.198968432 0.205231134 0.202796991 2 -23.41673 118.85732 11 2 480 488 0.400785793 0.406358189 0.404267915 2 -23.45204 119.62912 12 4 489 496 0.409140133 0.414012645 0.412271836 2 46.97828 -38.54632 17 4 722 731 0.609817216 0.616080469 0.613645005 2 47.07562 -41.46950 18 2 732 738 0.616775839 0.623038657 0.621229797 2 -23.44737 121.77541 22 2 979 988 0.818576794 0.824839468 0.822405042 2 -23.62455 119.84613 23 4 989 994 0.828320602 0.831797483 0.830754369 2 47.17680 -37.71718 24 5 995 1004 0.832493056 0.838782697 0.837725123 NA 7.92925 15.52222 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.309666 1.291691 -0.0073030669 -3.0806316 0.005170718 4.083766 5 1.312032 1.294278 -0.0079124083 -0.2133299 0.011029140 4.014369 6 1.312097 1.294313 -0.0079745686 1.7449146 0.021898833 4.727602 11 1.314427 1.296826 -0.0059508797 0.8747367 0.015552905 2.301719 12 1.314670 1.297070 0.0091399918 2.4360047 0.019606231 5.195222 17 1.316809 1.299259 -0.0005488156 -0.6477453 0.010000949 2.797528 18 1.317199 1.299602 0.0013769071 0.5659174 0.014878001 1.840531 22 1.318103 1.300609 -0.0068674467 1.6113792 0.019832382 5.192029 23 1.318217 1.300758 0.0053615677 1.7102236 0.008186844 2.249020 24 1.317998 1.300534 0.0559996754 -1.2528922 0.040658640 2.918201 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.717 co2l1 = 0.44 co2l0 = 0" [1] "co2l0 = -103.93 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "87 out of 271 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "184 out of 1031 1-min values rejected as stack air" [1] "29 out of 854 Line 1 1-min values rejected as stack air" [1] "155 out of 177 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"