[1] "2025-04-29 16:55:59 MDT" [1] "1210" "120926" "d270" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120926a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83291 63 [1] 83291 [1] 83291 [1] "testing skipping spike filter" [1] 83291 [1] 83291 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:56:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "374 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "374 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:56:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:56:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:56:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:56:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 374 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 514 row(s) with low FLWTA" [1] "Removed 212 row(s) with high PFRIDGE" [1] "TEMP: 284 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:56:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 399.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.51 minutes" [1] "Average Cal: 6.35 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 8 14 0.7766214 0.7807940 0.7794030 2 46.27575 -37.84669 1.306632 4 2 15 24 0.7814896 0.7877552 0.7853183 2 -23.63166 116.21554 1.306750 8 2 265 274 0.9832824 0.9895452 0.9871108 2 -23.49060 118.54809 1.309742 9 4 275 280 0.9902407 0.9965035 0.9940676 2 46.54981 -44.55769 1.309677 jfcv2 co2slp o2slp co2sd o2sd 3 1.288535 -0.006689844 -0.82119551 0.012117910 4.707612 4 1.288690 -0.002344626 1.21447311 0.013161259 5.812265 8 1.291729 -0.002295986 0.07625389 0.007560318 2.233530 9 1.291678 0.005835887 -1.95935024 0.026101515 7.603071 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.754 co2l1 = 0.443 co2l0 = 0" [1] "co2l0 = -103.22 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "6 out of 46 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "40 out of 231 1-min values rejected as stack air" [1] "0 out of 191 Line 1 1-min values rejected as stack air" [1] "40 out of 40 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"