[1] "2025-04-29 16:55:03 MDT" [1] "1210" "120924" "d268" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120924a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:55:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "428 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.774" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "428 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:55:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:55:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:55:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:55:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 428 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1008 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:55:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.2" [1] "Nominal linear calibrations:" [1] "co2scl = 0.437 co2off = 391.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.02 minutes" [1] "Average Cal: 7.11 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 146 151 0.1767702 0.1802504 0.1792074 2 43.19470 -45.37383 4 2 152 159 0.1837316 0.1899944 0.1873262 2 -28.00969 113.76795 8 2 307 314 0.3855235 0.3903956 0.3886554 2 -27.74697 113.69036 9 4 315 322 0.3931771 0.3987448 0.3968888 2 43.12225 -42.78993 13 4 533 539 0.5942801 0.5984560 0.5970644 2 43.09503 -45.35665 14 2 540 548 0.6019332 0.6075005 0.6054142 2 -27.98237 114.98660 17 2 784 790 0.8030428 0.8072194 0.8058284 2 -28.07298 116.33073 18 4 791 800 0.8100012 0.8162639 0.8138298 2 43.03502 -41.82208 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.315660 1.298479 6.865251e-05 1.6551273 0.001197192 2.511696 4 1.314866 1.297626 3.075678e-03 0.7269957 0.015671730 3.663775 8 1.309117 1.291534 -5.502089e-03 0.7110139 0.013692479 2.927143 9 1.308690 1.291064 2.120721e-03 1.1498065 0.010862564 3.953394 13 1.307563 1.289937 8.182624e-03 -1.8463165 0.013706080 3.438261 14 1.307857 1.290203 -2.529870e-03 0.7581385 0.006883653 1.922484 17 1.305882 1.288113 -1.069418e-02 0.1876832 0.017409004 3.427464 18 1.305611 1.287884 1.539516e-03 1.2313116 0.007640627 3.180044 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.51 co2l1 = 0.436 co2l0 = 0" [1] "co2l0 = -102.61 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "23 out of 270 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "247 out of 857 1-min values rejected as stack air" [1] "18 out of 516 Line 1 1-min values rejected as stack air" [1] "229 out of 341 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"