[1] "2017-04-05 21:40:20 MDT" [1] "1210" "120921" "d265" [1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/120921a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2017-04-05 21:40:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.78" [1] "773 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.78" [1] "773 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2017-04-05 21:40:34 MDT" [1] "Plotting 1-second data" [1] "2017-04-05 21:40:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2017-04-05 21:40:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2017-04-05 21:40:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 773 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 662 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2017-04-05 21:41:09 MDT" [1] "Reading in cylinder log" Read 68 records [1] "Finding cylinder IDs" Read 420 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -455.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -549.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -633.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 393.88 O2 = -579" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.24 O2 = -589.1" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.11 O2 = -557.6" [1] "Nominal linear calibrations:" [1] "co2scl = 0.447 co2off = 374.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.01 minutes" [1] "Average Cal: 5.09 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 5 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 3 [3,] 4 4 [4,] 5 6 [5,] 7 8 [1] "calperiods$grp" [1] 2 2 1 1 2 2 2 2 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.934 co2l1 = 0.444 co2l0 = 0" [1] "co2l0 = -102.73 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "83 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "167 out of 532 1-min values rejected as stack air" [1] "13 out of 243 Line 1 1-min values rejected as stack air" [1] "154 out of 289 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"