[1] "2025-04-29 16:52:27 MDT" [1] "1210" "120920" "d264" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120920a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:52:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.785" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "426 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.785" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "425 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:52:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:52:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:52:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:52:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 425 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1011 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:53:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -449.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.2" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.43 O2 = -582.3" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.29 O2 = -551.1" [1] "Nominal linear calibrations:" [1] "co2scl = 0.445 co2off = 380.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.01 minutes" [1] "Average Cal: 6.09 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 6 4 224 229 0.2173466 0.2208241 0.2197807 1 43.20478 -46.00055 10 2 442 445 0.4246215 0.4267079 0.4263602 2 -26.68375 99.25676 11 4 446 453 0.4301898 0.4350590 0.4333199 2 43.07781 -48.21612 15 4 655 660 0.6347002 0.6381775 0.6371345 2 43.12103 -46.47074 16 2 661 667 0.6388728 0.6451320 0.6437410 2 -26.65318 112.15690 19 2 863 868 0.8405521 0.8440292 0.8429862 2 -26.75250 113.35563 20 4 869 875 0.8475069 0.8516794 0.8502885 2 43.05356 -50.07947 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 6 1.290331 1.273161 0.002633178 1.4924970 0.003411645 2.096168 10 1.290545 1.273363 -0.006241937 5.9215644 0.004419417 4.192587 11 1.290709 1.273541 0.009691366 -0.2609884 0.023988734 2.322599 15 1.291584 1.274377 -0.006341620 -2.0137655 0.008314536 3.180566 16 1.291635 1.274444 -0.005820346 0.5663032 0.013995887 1.081763 19 1.291816 1.274559 -0.030110869 5.2814850 0.039461479 6.990709 20 1.291777 1.274532 0.010316319 0.5528701 0.020573230 1.194825 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.162 co2l1 = 0.444 co2l0 = 0" [1] "co2l0 = -101.31 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "6 out of 400 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "394 out of 867 1-min values rejected as stack air" [1] "4 out of 477 Line 1 1-min values rejected as stack air" [1] "390 out of 390 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"